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Characterization of the complete chloroplast genome of Populus deltoides Zhonglin 2025

The complete chloroplast genome of Populus deltoides was characterized by reference-based assembly using whole-genome sequencing data. The total chloroplast genome size of Populus deltoides included a pair of inverted repeat regions (IRs) of 27,649 bp each, a small single-copy region (SSC) of 16,563...

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Autores principales: Zhuang, Weibing, Shu, Xiaochun, Zhang, Ming, Wang, Tao, Zhang, Fengjiao, Wang, Ning, Wang, Zhong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7671709/
https://www.ncbi.nlm.nih.gov/pubmed/33367076
http://dx.doi.org/10.1080/23802359.2020.1833773
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author Zhuang, Weibing
Shu, Xiaochun
Zhang, Ming
Wang, Tao
Zhang, Fengjiao
Wang, Ning
Wang, Zhong
author_facet Zhuang, Weibing
Shu, Xiaochun
Zhang, Ming
Wang, Tao
Zhang, Fengjiao
Wang, Ning
Wang, Zhong
author_sort Zhuang, Weibing
collection PubMed
description The complete chloroplast genome of Populus deltoides was characterized by reference-based assembly using whole-genome sequencing data. The total chloroplast genome size of Populus deltoides included a pair of inverted repeat regions (IRs) of 27,649 bp each, a small single-copy region (SSC) of 16,563 bp, and large single-copy region (LSC) of 85,096 bp, which was 156,957 bp in length. A total of 109 genes were predicted from the chloroplast genome, including 83 protein-coding genes, 22 tRNA genes, and four rRNA genes. The GC content of chloroplast genome for Populus deltoides was 36.68%. The phylogenetic analysis based on the reported chloroplast genomes of Populus showed that the chloroplast of the Populus deltoides is most closely related to the Populus fremontii. The complete chloroplast genome of Populus deltoides provides new insights into Populus evolutionary and genomic studies.
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spelling pubmed-76717092020-12-22 Characterization of the complete chloroplast genome of Populus deltoides Zhonglin 2025 Zhuang, Weibing Shu, Xiaochun Zhang, Ming Wang, Tao Zhang, Fengjiao Wang, Ning Wang, Zhong Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome of Populus deltoides was characterized by reference-based assembly using whole-genome sequencing data. The total chloroplast genome size of Populus deltoides included a pair of inverted repeat regions (IRs) of 27,649 bp each, a small single-copy region (SSC) of 16,563 bp, and large single-copy region (LSC) of 85,096 bp, which was 156,957 bp in length. A total of 109 genes were predicted from the chloroplast genome, including 83 protein-coding genes, 22 tRNA genes, and four rRNA genes. The GC content of chloroplast genome for Populus deltoides was 36.68%. The phylogenetic analysis based on the reported chloroplast genomes of Populus showed that the chloroplast of the Populus deltoides is most closely related to the Populus fremontii. The complete chloroplast genome of Populus deltoides provides new insights into Populus evolutionary and genomic studies. Taylor & Francis 2020-11-12 /pmc/articles/PMC7671709/ /pubmed/33367076 http://dx.doi.org/10.1080/23802359.2020.1833773 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhuang, Weibing
Shu, Xiaochun
Zhang, Ming
Wang, Tao
Zhang, Fengjiao
Wang, Ning
Wang, Zhong
Characterization of the complete chloroplast genome of Populus deltoides Zhonglin 2025
title Characterization of the complete chloroplast genome of Populus deltoides Zhonglin 2025
title_full Characterization of the complete chloroplast genome of Populus deltoides Zhonglin 2025
title_fullStr Characterization of the complete chloroplast genome of Populus deltoides Zhonglin 2025
title_full_unstemmed Characterization of the complete chloroplast genome of Populus deltoides Zhonglin 2025
title_short Characterization of the complete chloroplast genome of Populus deltoides Zhonglin 2025
title_sort characterization of the complete chloroplast genome of populus deltoides zhonglin 2025
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7671709/
https://www.ncbi.nlm.nih.gov/pubmed/33367076
http://dx.doi.org/10.1080/23802359.2020.1833773
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