Cargando…
myPresto/omegagene 2020: a molecular dynamics simulation engine for virtual-system coupled sampling
The molecular dynamics (MD) method is a promising approach for investigating the molecular mechanisms of microscopic phenomena. In particular, generalized ensemble MD methods can efficiently explore the conformational space with a rugged free-energy surface. However, the implementation and acquisiti...
Autores principales: | Kasahara, Kota, Terazawa, Hiroki, Itaya, Hayato, Goto, Satoshi, Nakamura, Haruki, Takahashi, Takuya, Higo, Junichi |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Biophysical Society of Japan
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7671739/ https://www.ncbi.nlm.nih.gov/pubmed/33240741 http://dx.doi.org/10.2142/biophysico.BSJ-2020013 |
Ejemplares similares
-
myPresto/omegagene: a GPU-accelerated molecular dynamics simulator tailored for enhanced conformational sampling methods with a non-Ewald electrostatic scheme
por: Kasahara, Kota, et al.
Publicado: (2016) -
Studies on Molecular Dynamics of Intrinsically Disordered Proteins and Their Fuzzy Complexes: A Mini-Review
por: Kasahara, Kota, et al.
Publicado: (2019) -
GIRAF: a method for fast search and flexible alignment of ligand binding interfaces in proteins at atomic resolution
por: Kinjo, Akira R., et al.
Publicado: (2012) -
LigandBox: A database for 3D structures of chemical compounds
por: Kawabata, Takeshi, et al.
Publicado: (2013) -
NeProc predicts binding segments in intrinsically disordered regions without learning binding region sequences
por: Anbo, Hiroto, et al.
Publicado: (2020)