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AiZynthFinder: a fast, robust and flexible open-source software for retrosynthetic planning

We present the open-source AiZynthFinder software that can be readily used in retrosynthetic planning. The algorithm is based on a Monte Carlo tree search that recursively breaks down a molecule to purchasable precursors. The tree search is guided by an artificial neural network policy that suggests...

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Autores principales: Genheden, Samuel, Thakkar, Amol, Chadimová, Veronika, Reymond, Jean-Louis, Engkvist, Ola, Bjerrum, Esben
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7672904/
https://www.ncbi.nlm.nih.gov/pubmed/33292482
http://dx.doi.org/10.1186/s13321-020-00472-1
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author Genheden, Samuel
Thakkar, Amol
Chadimová, Veronika
Reymond, Jean-Louis
Engkvist, Ola
Bjerrum, Esben
author_facet Genheden, Samuel
Thakkar, Amol
Chadimová, Veronika
Reymond, Jean-Louis
Engkvist, Ola
Bjerrum, Esben
author_sort Genheden, Samuel
collection PubMed
description We present the open-source AiZynthFinder software that can be readily used in retrosynthetic planning. The algorithm is based on a Monte Carlo tree search that recursively breaks down a molecule to purchasable precursors. The tree search is guided by an artificial neural network policy that suggests possible precursors by utilizing a library of known reaction templates. The software is fast and can typically find a solution in less than 10 s and perform a complete search in less than 1 min. Moreover, the development of the code was guided by a range of software engineering principles such as automatic testing, system design and continuous integration leading to robust software with high maintainability. Finally, the software is well documented to make it suitable for beginners. The software is available at http://www.github.com/MolecularAI/aizynthfinder.
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spelling pubmed-76729042020-11-19 AiZynthFinder: a fast, robust and flexible open-source software for retrosynthetic planning Genheden, Samuel Thakkar, Amol Chadimová, Veronika Reymond, Jean-Louis Engkvist, Ola Bjerrum, Esben J Cheminform Software We present the open-source AiZynthFinder software that can be readily used in retrosynthetic planning. The algorithm is based on a Monte Carlo tree search that recursively breaks down a molecule to purchasable precursors. The tree search is guided by an artificial neural network policy that suggests possible precursors by utilizing a library of known reaction templates. The software is fast and can typically find a solution in less than 10 s and perform a complete search in less than 1 min. Moreover, the development of the code was guided by a range of software engineering principles such as automatic testing, system design and continuous integration leading to robust software with high maintainability. Finally, the software is well documented to make it suitable for beginners. The software is available at http://www.github.com/MolecularAI/aizynthfinder. Springer International Publishing 2020-11-17 /pmc/articles/PMC7672904/ /pubmed/33292482 http://dx.doi.org/10.1186/s13321-020-00472-1 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Software
Genheden, Samuel
Thakkar, Amol
Chadimová, Veronika
Reymond, Jean-Louis
Engkvist, Ola
Bjerrum, Esben
AiZynthFinder: a fast, robust and flexible open-source software for retrosynthetic planning
title AiZynthFinder: a fast, robust and flexible open-source software for retrosynthetic planning
title_full AiZynthFinder: a fast, robust and flexible open-source software for retrosynthetic planning
title_fullStr AiZynthFinder: a fast, robust and flexible open-source software for retrosynthetic planning
title_full_unstemmed AiZynthFinder: a fast, robust and flexible open-source software for retrosynthetic planning
title_short AiZynthFinder: a fast, robust and flexible open-source software for retrosynthetic planning
title_sort aizynthfinder: a fast, robust and flexible open-source software for retrosynthetic planning
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7672904/
https://www.ncbi.nlm.nih.gov/pubmed/33292482
http://dx.doi.org/10.1186/s13321-020-00472-1
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