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CNN-based transfer learning–BiLSTM network: A novel approach for COVID-19 infection detection

Coronavirus disease 2019 (COVID-2019), which emerged in Wuhan, China in 2019 and has spread rapidly all over the world since the beginning of 2020, has infected millions of people and caused many deaths. For this pandemic, which is still in effect, mobilization has started all over the world, and va...

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Autores principales: Aslan, Muhammet Fatih, Unlersen, Muhammed Fahri, Sabanci, Kadir, Durdu, Akif
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7673219/
https://www.ncbi.nlm.nih.gov/pubmed/33230395
http://dx.doi.org/10.1016/j.asoc.2020.106912
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author Aslan, Muhammet Fatih
Unlersen, Muhammed Fahri
Sabanci, Kadir
Durdu, Akif
author_facet Aslan, Muhammet Fatih
Unlersen, Muhammed Fahri
Sabanci, Kadir
Durdu, Akif
author_sort Aslan, Muhammet Fatih
collection PubMed
description Coronavirus disease 2019 (COVID-2019), which emerged in Wuhan, China in 2019 and has spread rapidly all over the world since the beginning of 2020, has infected millions of people and caused many deaths. For this pandemic, which is still in effect, mobilization has started all over the world, and various restrictions and precautions have been taken to prevent the spread of this disease. In addition, infected people must be identified in order to control the infection. However, due to the inadequate number of Reverse Transcription Polymerase Chain Reaction (RT-PCR) tests, Chest computed tomography (CT) becomes a popular tool to assist the diagnosis of COVID-19. In this study, two deep learning architectures have been proposed that automatically detect positive COVID-19 cases using Chest CT X-ray images. Lung segmentation (preprocessing) in CT images, which are given as input to these proposed architectures, is performed automatically with Artificial Neural Networks (ANN). Since both architectures contain AlexNet architecture, the recommended method is a transfer learning application. However, the second proposed architecture is a hybrid structure as it contains a Bidirectional Long Short-Term Memories (BiLSTM) layer, which also takes into account the temporal properties. While the COVID-19 classification accuracy of the first architecture is 98.14%, this value is 98.70% in the second hybrid architecture. The results prove that the proposed architecture shows outstanding success in infection detection and, therefore this study contributes to previous studies in terms of both deep architectural design and high classification success.
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spelling pubmed-76732192020-11-19 CNN-based transfer learning–BiLSTM network: A novel approach for COVID-19 infection detection Aslan, Muhammet Fatih Unlersen, Muhammed Fahri Sabanci, Kadir Durdu, Akif Appl Soft Comput Article Coronavirus disease 2019 (COVID-2019), which emerged in Wuhan, China in 2019 and has spread rapidly all over the world since the beginning of 2020, has infected millions of people and caused many deaths. For this pandemic, which is still in effect, mobilization has started all over the world, and various restrictions and precautions have been taken to prevent the spread of this disease. In addition, infected people must be identified in order to control the infection. However, due to the inadequate number of Reverse Transcription Polymerase Chain Reaction (RT-PCR) tests, Chest computed tomography (CT) becomes a popular tool to assist the diagnosis of COVID-19. In this study, two deep learning architectures have been proposed that automatically detect positive COVID-19 cases using Chest CT X-ray images. Lung segmentation (preprocessing) in CT images, which are given as input to these proposed architectures, is performed automatically with Artificial Neural Networks (ANN). Since both architectures contain AlexNet architecture, the recommended method is a transfer learning application. However, the second proposed architecture is a hybrid structure as it contains a Bidirectional Long Short-Term Memories (BiLSTM) layer, which also takes into account the temporal properties. While the COVID-19 classification accuracy of the first architecture is 98.14%, this value is 98.70% in the second hybrid architecture. The results prove that the proposed architecture shows outstanding success in infection detection and, therefore this study contributes to previous studies in terms of both deep architectural design and high classification success. Elsevier B.V. 2021-01 2020-11-18 /pmc/articles/PMC7673219/ /pubmed/33230395 http://dx.doi.org/10.1016/j.asoc.2020.106912 Text en © 2020 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Aslan, Muhammet Fatih
Unlersen, Muhammed Fahri
Sabanci, Kadir
Durdu, Akif
CNN-based transfer learning–BiLSTM network: A novel approach for COVID-19 infection detection
title CNN-based transfer learning–BiLSTM network: A novel approach for COVID-19 infection detection
title_full CNN-based transfer learning–BiLSTM network: A novel approach for COVID-19 infection detection
title_fullStr CNN-based transfer learning–BiLSTM network: A novel approach for COVID-19 infection detection
title_full_unstemmed CNN-based transfer learning–BiLSTM network: A novel approach for COVID-19 infection detection
title_short CNN-based transfer learning–BiLSTM network: A novel approach for COVID-19 infection detection
title_sort cnn-based transfer learning–bilstm network: a novel approach for covid-19 infection detection
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7673219/
https://www.ncbi.nlm.nih.gov/pubmed/33230395
http://dx.doi.org/10.1016/j.asoc.2020.106912
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