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Reporting of methodologies used for clonogenic assays to determine radiosensitivity

Radiotherapy treatment strategies should be personalized based on the radiosensitivity of individual tumors. Clonogenic assays are the gold standard method for in vitro assessment of radiosensitivity. Reproducibility is the critical factor for scientific rigor; however, this is reduced by insufficie...

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Autores principales: Oike, Takahiro, Komatsu, Shuichiro, Komatsu, Yuka, Nachankar, Ankita, Darwis, Narisa Dewi Maulany, Shibata, Atsushi, Ohno, Tatsuya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7674694/
https://www.ncbi.nlm.nih.gov/pubmed/32823284
http://dx.doi.org/10.1093/jrr/rraa064
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author Oike, Takahiro
Komatsu, Shuichiro
Komatsu, Yuka
Nachankar, Ankita
Darwis, Narisa Dewi Maulany
Shibata, Atsushi
Ohno, Tatsuya
author_facet Oike, Takahiro
Komatsu, Shuichiro
Komatsu, Yuka
Nachankar, Ankita
Darwis, Narisa Dewi Maulany
Shibata, Atsushi
Ohno, Tatsuya
author_sort Oike, Takahiro
collection PubMed
description Radiotherapy treatment strategies should be personalized based on the radiosensitivity of individual tumors. Clonogenic assays are the gold standard method for in vitro assessment of radiosensitivity. Reproducibility is the critical factor for scientific rigor; however, this is reduced by insufficient reporting of methodologies. In reality, the reporting standards of methodologies pertaining to clonogenic assays remain unclear. To address this, we performed a literature search and qualitative analysis of the reporting of methodologies pertaining to clonogenic assays. A comprehensive literature review identified 1672 papers that report the radiosensitivity of human cancer cells based on clonogenic assays. From the identified papers, important experimental parameters (i.e. number of biological replicates, technical replicates, radiation source and dose rate) were recorded and analyzed. We found that, among the studies, (i) 30.5% did not report biological or technical replicates; (ii) 47.0% did not use biological or technical replicates; (iii) 3.8% did not report the radiation source; and (iv) 32.3% did not report the dose rate. These data suggest that reporting of methodologies pertaining to clonogenic assays in a considerable number of previously published studies is insufficient, thereby threatening reproducibility. This highlights the need to raise awareness of standardization of the methodologies used to conduct clonogenic assays.
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spelling pubmed-76746942020-11-24 Reporting of methodologies used for clonogenic assays to determine radiosensitivity Oike, Takahiro Komatsu, Shuichiro Komatsu, Yuka Nachankar, Ankita Darwis, Narisa Dewi Maulany Shibata, Atsushi Ohno, Tatsuya J Radiat Res Fundamental Radiation Science Radiotherapy treatment strategies should be personalized based on the radiosensitivity of individual tumors. Clonogenic assays are the gold standard method for in vitro assessment of radiosensitivity. Reproducibility is the critical factor for scientific rigor; however, this is reduced by insufficient reporting of methodologies. In reality, the reporting standards of methodologies pertaining to clonogenic assays remain unclear. To address this, we performed a literature search and qualitative analysis of the reporting of methodologies pertaining to clonogenic assays. A comprehensive literature review identified 1672 papers that report the radiosensitivity of human cancer cells based on clonogenic assays. From the identified papers, important experimental parameters (i.e. number of biological replicates, technical replicates, radiation source and dose rate) were recorded and analyzed. We found that, among the studies, (i) 30.5% did not report biological or technical replicates; (ii) 47.0% did not use biological or technical replicates; (iii) 3.8% did not report the radiation source; and (iv) 32.3% did not report the dose rate. These data suggest that reporting of methodologies pertaining to clonogenic assays in a considerable number of previously published studies is insufficient, thereby threatening reproducibility. This highlights the need to raise awareness of standardization of the methodologies used to conduct clonogenic assays. Oxford University Press 2020-08-22 /pmc/articles/PMC7674694/ /pubmed/32823284 http://dx.doi.org/10.1093/jrr/rraa064 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of The Japanese Radiation Research Society and Japanese Society for Radiation Oncology. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Fundamental Radiation Science
Oike, Takahiro
Komatsu, Shuichiro
Komatsu, Yuka
Nachankar, Ankita
Darwis, Narisa Dewi Maulany
Shibata, Atsushi
Ohno, Tatsuya
Reporting of methodologies used for clonogenic assays to determine radiosensitivity
title Reporting of methodologies used for clonogenic assays to determine radiosensitivity
title_full Reporting of methodologies used for clonogenic assays to determine radiosensitivity
title_fullStr Reporting of methodologies used for clonogenic assays to determine radiosensitivity
title_full_unstemmed Reporting of methodologies used for clonogenic assays to determine radiosensitivity
title_short Reporting of methodologies used for clonogenic assays to determine radiosensitivity
title_sort reporting of methodologies used for clonogenic assays to determine radiosensitivity
topic Fundamental Radiation Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7674694/
https://www.ncbi.nlm.nih.gov/pubmed/32823284
http://dx.doi.org/10.1093/jrr/rraa064
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