Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises

The US PulseNet and GenomeTrakr laboratory networks work together within the Genomics for Food Safety (Gen-FS) consortium to collect and analyze genomic data for foodborne pathogen surveillance (species include Salmonella enterica, Listeria monocytogenes, Escherichia coli (STECs), and Campylobactor)...

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Autores principales: Timme, Ruth E., Lafon, Patricia C., Balkey, Maria, Adams, Jennifer K., Wagner, Darlene, Carleton, Heather, Strain, Errol, Hoffmann, Maria, Sabol, Ashley, Rand, Hugh, Lindsey, Rebecca, Sheehan, Deborah, Baugher, Joseph D., Trees, Eija
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Data Descriptor
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7677400/
https://www.ncbi.nlm.nih.gov/pubmed/33214563
http://dx.doi.org/10.1038/s41597-020-00740-7
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author Timme, Ruth E.
Lafon, Patricia C.
Balkey, Maria
Adams, Jennifer K.
Wagner, Darlene
Carleton, Heather
Strain, Errol
Hoffmann, Maria
Sabol, Ashley
Rand, Hugh
Lindsey, Rebecca
Sheehan, Deborah
Baugher, Joseph D.
Trees, Eija
author_facet Timme, Ruth E.
Lafon, Patricia C.
Balkey, Maria
Adams, Jennifer K.
Wagner, Darlene
Carleton, Heather
Strain, Errol
Hoffmann, Maria
Sabol, Ashley
Rand, Hugh
Lindsey, Rebecca
Sheehan, Deborah
Baugher, Joseph D.
Trees, Eija
author_sort Timme, Ruth E.
collection PubMed
description The US PulseNet and GenomeTrakr laboratory networks work together within the Genomics for Food Safety (Gen-FS) consortium to collect and analyze genomic data for foodborne pathogen surveillance (species include Salmonella enterica, Listeria monocytogenes, Escherichia coli (STECs), and Campylobactor). In 2017 these two laboratory networks started harmonizing their respective proficiency test exercises, agreeing on distributing a single strain-set and following the same standard operating procedure (SOP) for genomic data collection, running a jointly coordinated annual proficiency test exercise. In this data release we are publishing the reference genomes and raw data submissions for the 2017 and 2018 proficiency test exercises.
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spelling pubmed-76774002020-11-20 Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises Timme, Ruth E. Lafon, Patricia C. Balkey, Maria Adams, Jennifer K. Wagner, Darlene Carleton, Heather Strain, Errol Hoffmann, Maria Sabol, Ashley Rand, Hugh Lindsey, Rebecca Sheehan, Deborah Baugher, Joseph D. Trees, Eija Sci Data Data Descriptor The US PulseNet and GenomeTrakr laboratory networks work together within the Genomics for Food Safety (Gen-FS) consortium to collect and analyze genomic data for foodborne pathogen surveillance (species include Salmonella enterica, Listeria monocytogenes, Escherichia coli (STECs), and Campylobactor). In 2017 these two laboratory networks started harmonizing their respective proficiency test exercises, agreeing on distributing a single strain-set and following the same standard operating procedure (SOP) for genomic data collection, running a jointly coordinated annual proficiency test exercise. In this data release we are publishing the reference genomes and raw data submissions for the 2017 and 2018 proficiency test exercises. Nature Publishing Group UK 2020-11-19 /pmc/articles/PMC7677400/ /pubmed/33214563 http://dx.doi.org/10.1038/s41597-020-00740-7 Text en © This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Timme, Ruth E.
Lafon, Patricia C.
Balkey, Maria
Adams, Jennifer K.
Wagner, Darlene
Carleton, Heather
Strain, Errol
Hoffmann, Maria
Sabol, Ashley
Rand, Hugh
Lindsey, Rebecca
Sheehan, Deborah
Baugher, Joseph D.
Trees, Eija
Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises
title Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises
title_full Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises
title_fullStr Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises
title_full_unstemmed Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises
title_short Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises
title_sort gen-fs coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7677400/
https://www.ncbi.nlm.nih.gov/pubmed/33214563
http://dx.doi.org/10.1038/s41597-020-00740-7
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