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Numerical framework for simulating bio-species transport in microfluidic channels with application to antibody biosensors
Diagnosis is a fundamental stage in health care and medical treatment. Microfluidic biosensors and lab-on-a-chip devices are amongst the few practical tools for achieving this goal. A new computational code, specifically for designing microfluidic-integrated biosensors is developed, the details of w...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7679250/ https://www.ncbi.nlm.nih.gov/pubmed/33251124 http://dx.doi.org/10.1016/j.mex.2020.101132 |
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author | Shahbazi, Fatemeh Jabbari, Masoud Esfahani, Mohammad Nasr Keshmiri, Amir |
author_facet | Shahbazi, Fatemeh Jabbari, Masoud Esfahani, Mohammad Nasr Keshmiri, Amir |
author_sort | Shahbazi, Fatemeh |
collection | PubMed |
description | Diagnosis is a fundamental stage in health care and medical treatment. Microfluidic biosensors and lab-on-a-chip devices are amongst the few practical tools for achieving this goal. A new computational code, specifically for designing microfluidic-integrated biosensors is developed, the details of which is presented in this work. This new approach is developed using control-volume based finite-element (CVFEM) method and solves bio-recognition chemical reactions and full Navier–Stokes equations. The results of the proposed platform are validated against the experimental data for a microfluidic based biosensor, where excellent agreement is achieved. The properties of the biosensor, sample, buffer fluid and even the microfluidic channel can easily be modified in this platform. This feature provides the scientific community with the ability to design a specific biosensor for requested point-of-care applications. • A new approach is developed using control-volume based finite-element (CVFEM) method for investigating flow inside a microfluidic-integrated biosensor. It is also used to study the influence of surface functionalization on binding cycle. • The proposed model solves bio-recognition chemical reactions as well as full Navier–Stokes and energy equations. Experimental-based or personalized equations of the chemical reactions and flow behaviour are adoptable to this code. • The developed model is Fortran-based and has the potential to be used in both industry and academia for biosensing technology. |
format | Online Article Text |
id | pubmed-7679250 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-76792502020-11-27 Numerical framework for simulating bio-species transport in microfluidic channels with application to antibody biosensors Shahbazi, Fatemeh Jabbari, Masoud Esfahani, Mohammad Nasr Keshmiri, Amir MethodsX Method Article Diagnosis is a fundamental stage in health care and medical treatment. Microfluidic biosensors and lab-on-a-chip devices are amongst the few practical tools for achieving this goal. A new computational code, specifically for designing microfluidic-integrated biosensors is developed, the details of which is presented in this work. This new approach is developed using control-volume based finite-element (CVFEM) method and solves bio-recognition chemical reactions and full Navier–Stokes equations. The results of the proposed platform are validated against the experimental data for a microfluidic based biosensor, where excellent agreement is achieved. The properties of the biosensor, sample, buffer fluid and even the microfluidic channel can easily be modified in this platform. This feature provides the scientific community with the ability to design a specific biosensor for requested point-of-care applications. • A new approach is developed using control-volume based finite-element (CVFEM) method for investigating flow inside a microfluidic-integrated biosensor. It is also used to study the influence of surface functionalization on binding cycle. • The proposed model solves bio-recognition chemical reactions as well as full Navier–Stokes and energy equations. Experimental-based or personalized equations of the chemical reactions and flow behaviour are adoptable to this code. • The developed model is Fortran-based and has the potential to be used in both industry and academia for biosensing technology. Elsevier 2020-11-06 /pmc/articles/PMC7679250/ /pubmed/33251124 http://dx.doi.org/10.1016/j.mex.2020.101132 Text en © 2020 The Authors. Published by Elsevier B.V. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Method Article Shahbazi, Fatemeh Jabbari, Masoud Esfahani, Mohammad Nasr Keshmiri, Amir Numerical framework for simulating bio-species transport in microfluidic channels with application to antibody biosensors |
title | Numerical framework for simulating bio-species transport in microfluidic channels with application to antibody biosensors |
title_full | Numerical framework for simulating bio-species transport in microfluidic channels with application to antibody biosensors |
title_fullStr | Numerical framework for simulating bio-species transport in microfluidic channels with application to antibody biosensors |
title_full_unstemmed | Numerical framework for simulating bio-species transport in microfluidic channels with application to antibody biosensors |
title_short | Numerical framework for simulating bio-species transport in microfluidic channels with application to antibody biosensors |
title_sort | numerical framework for simulating bio-species transport in microfluidic channels with application to antibody biosensors |
topic | Method Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7679250/ https://www.ncbi.nlm.nih.gov/pubmed/33251124 http://dx.doi.org/10.1016/j.mex.2020.101132 |
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