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Genomic surveillance of SARS-CoV-2 in Thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated ORF7a
Coronavirus Disease 2019 (COVID-19) is a global public health threat. Genomic surveillance of SARS-CoV-2 was implemented in March of 2020 at a major diagnostic hub in Bangkok, Thailand. Several virus lineages supposedly originated in many countries were found, and a Thai-specific lineage, designated...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Published by Elsevier B.V.
2021
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7679658/ https://www.ncbi.nlm.nih.gov/pubmed/33227343 http://dx.doi.org/10.1016/j.virusres.2020.198233 |
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| author | Joonlasak, Khajohn Batty, Elizabeth M Kochakarn, Theerarat Panthan, Bhakbhoom Kümpornsin, Krittikorn Jiaranai, Poramate Wangwiwatsin, Arporn Huang, Angkana Kotanan, Namfon Jaru-Ampornpan, Peera Manasatienkij, Wudtichai Watthanachockchai, Treewat Rakmanee, Kingkan Jones, Anthony R. Fernandez, Stefan Sensorn, Insee Sungkanuparph, Somnuek Pasomsub, Ekawat Klungthong, Chonticha Chookajorn, Thanat Chantratita, Wasun |
| author_facet | Joonlasak, Khajohn Batty, Elizabeth M Kochakarn, Theerarat Panthan, Bhakbhoom Kümpornsin, Krittikorn Jiaranai, Poramate Wangwiwatsin, Arporn Huang, Angkana Kotanan, Namfon Jaru-Ampornpan, Peera Manasatienkij, Wudtichai Watthanachockchai, Treewat Rakmanee, Kingkan Jones, Anthony R. Fernandez, Stefan Sensorn, Insee Sungkanuparph, Somnuek Pasomsub, Ekawat Klungthong, Chonticha Chookajorn, Thanat Chantratita, Wasun |
| author_sort | Joonlasak, Khajohn |
| collection | PubMed |
| description | Coronavirus Disease 2019 (COVID-19) is a global public health threat. Genomic surveillance of SARS-CoV-2 was implemented in March of 2020 at a major diagnostic hub in Bangkok, Thailand. Several virus lineages supposedly originated in many countries were found, and a Thai-specific lineage, designated A/Thai-1, has expanded to be predominant in Thailand. A virus sample in the SARS-CoV-2 A/Thai-1 lineage contains a frame-shift deletion at ORF7a, encoding a putative host antagonizing factor of the virus. |
| format | Online Article Text |
| id | pubmed-7679658 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2021 |
| publisher | Published by Elsevier B.V. |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-76796582020-11-23 Genomic surveillance of SARS-CoV-2 in Thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated ORF7a Joonlasak, Khajohn Batty, Elizabeth M Kochakarn, Theerarat Panthan, Bhakbhoom Kümpornsin, Krittikorn Jiaranai, Poramate Wangwiwatsin, Arporn Huang, Angkana Kotanan, Namfon Jaru-Ampornpan, Peera Manasatienkij, Wudtichai Watthanachockchai, Treewat Rakmanee, Kingkan Jones, Anthony R. Fernandez, Stefan Sensorn, Insee Sungkanuparph, Somnuek Pasomsub, Ekawat Klungthong, Chonticha Chookajorn, Thanat Chantratita, Wasun Virus Res Article Coronavirus Disease 2019 (COVID-19) is a global public health threat. Genomic surveillance of SARS-CoV-2 was implemented in March of 2020 at a major diagnostic hub in Bangkok, Thailand. Several virus lineages supposedly originated in many countries were found, and a Thai-specific lineage, designated A/Thai-1, has expanded to be predominant in Thailand. A virus sample in the SARS-CoV-2 A/Thai-1 lineage contains a frame-shift deletion at ORF7a, encoding a putative host antagonizing factor of the virus. Published by Elsevier B.V. 2021-01-15 2020-11-21 /pmc/articles/PMC7679658/ /pubmed/33227343 http://dx.doi.org/10.1016/j.virusres.2020.198233 Text en © 2020 Published by Elsevier B.V. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
| spellingShingle | Article Joonlasak, Khajohn Batty, Elizabeth M Kochakarn, Theerarat Panthan, Bhakbhoom Kümpornsin, Krittikorn Jiaranai, Poramate Wangwiwatsin, Arporn Huang, Angkana Kotanan, Namfon Jaru-Ampornpan, Peera Manasatienkij, Wudtichai Watthanachockchai, Treewat Rakmanee, Kingkan Jones, Anthony R. Fernandez, Stefan Sensorn, Insee Sungkanuparph, Somnuek Pasomsub, Ekawat Klungthong, Chonticha Chookajorn, Thanat Chantratita, Wasun Genomic surveillance of SARS-CoV-2 in Thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated ORF7a |
| title | Genomic surveillance of SARS-CoV-2 in Thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated ORF7a |
| title_full | Genomic surveillance of SARS-CoV-2 in Thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated ORF7a |
| title_fullStr | Genomic surveillance of SARS-CoV-2 in Thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated ORF7a |
| title_full_unstemmed | Genomic surveillance of SARS-CoV-2 in Thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated ORF7a |
| title_short | Genomic surveillance of SARS-CoV-2 in Thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated ORF7a |
| title_sort | genomic surveillance of sars-cov-2 in thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated orf7a |
| topic | Article |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7679658/ https://www.ncbi.nlm.nih.gov/pubmed/33227343 http://dx.doi.org/10.1016/j.virusres.2020.198233 |
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