Cargando…

Stem cell imaging through convolutional neural networks: current issues and future directions in artificial intelligence technology

Stem cells are primitive and precursor cells with the potential to reproduce into diverse mature and functional cell types in the body throughout the developmental stages of life. Their remarkable potential has led to numerous medical discoveries and breakthroughs in science. As a result, stem cell–...

Descripción completa

Detalles Bibliográficos
Autores principales: Ramakrishna, Ramanaesh Rao, Abd Hamid, Zariyantey, Wan Zaki, Wan Mimi Diyana, Huddin, Aqilah Baseri, Mathialagan, Ramya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7680049/
https://www.ncbi.nlm.nih.gov/pubmed/33240655
http://dx.doi.org/10.7717/peerj.10346
_version_ 1783612384662781952
author Ramakrishna, Ramanaesh Rao
Abd Hamid, Zariyantey
Wan Zaki, Wan Mimi Diyana
Huddin, Aqilah Baseri
Mathialagan, Ramya
author_facet Ramakrishna, Ramanaesh Rao
Abd Hamid, Zariyantey
Wan Zaki, Wan Mimi Diyana
Huddin, Aqilah Baseri
Mathialagan, Ramya
author_sort Ramakrishna, Ramanaesh Rao
collection PubMed
description Stem cells are primitive and precursor cells with the potential to reproduce into diverse mature and functional cell types in the body throughout the developmental stages of life. Their remarkable potential has led to numerous medical discoveries and breakthroughs in science. As a result, stem cell–based therapy has emerged as a new subspecialty in medicine. One promising stem cell being investigated is the induced pluripotent stem cell (iPSC), which is obtained by genetically reprogramming mature cells to convert them into embryonic-like stem cells. These iPSCs are used to study the onset of disease, drug development, and medical therapies. However, functional studies on iPSCs involve the analysis of iPSC-derived colonies through manual identification, which is time-consuming, error-prone, and training-dependent. Thus, an automated instrument for the analysis of iPSC colonies is needed. Recently, artificial intelligence (AI) has emerged as a novel technology to tackle this challenge. In particular, deep learning, a subfield of AI, offers an automated platform for analyzing iPSC colonies and other colony-forming stem cells. Deep learning rectifies data features using a convolutional neural network (CNN), a type of multi-layered neural network that can play an innovative role in image recognition. CNNs are able to distinguish cells with high accuracy based on morphologic and textural changes. Therefore, CNNs have the potential to create a future field of deep learning tasks aimed at solving various challenges in stem cell studies. This review discusses the progress and future of CNNs in stem cell imaging for therapy and research.
format Online
Article
Text
id pubmed-7680049
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher PeerJ Inc.
record_format MEDLINE/PubMed
spelling pubmed-76800492020-11-24 Stem cell imaging through convolutional neural networks: current issues and future directions in artificial intelligence technology Ramakrishna, Ramanaesh Rao Abd Hamid, Zariyantey Wan Zaki, Wan Mimi Diyana Huddin, Aqilah Baseri Mathialagan, Ramya PeerJ Bioinformatics Stem cells are primitive and precursor cells with the potential to reproduce into diverse mature and functional cell types in the body throughout the developmental stages of life. Their remarkable potential has led to numerous medical discoveries and breakthroughs in science. As a result, stem cell–based therapy has emerged as a new subspecialty in medicine. One promising stem cell being investigated is the induced pluripotent stem cell (iPSC), which is obtained by genetically reprogramming mature cells to convert them into embryonic-like stem cells. These iPSCs are used to study the onset of disease, drug development, and medical therapies. However, functional studies on iPSCs involve the analysis of iPSC-derived colonies through manual identification, which is time-consuming, error-prone, and training-dependent. Thus, an automated instrument for the analysis of iPSC colonies is needed. Recently, artificial intelligence (AI) has emerged as a novel technology to tackle this challenge. In particular, deep learning, a subfield of AI, offers an automated platform for analyzing iPSC colonies and other colony-forming stem cells. Deep learning rectifies data features using a convolutional neural network (CNN), a type of multi-layered neural network that can play an innovative role in image recognition. CNNs are able to distinguish cells with high accuracy based on morphologic and textural changes. Therefore, CNNs have the potential to create a future field of deep learning tasks aimed at solving various challenges in stem cell studies. This review discusses the progress and future of CNNs in stem cell imaging for therapy and research. PeerJ Inc. 2020-11-18 /pmc/articles/PMC7680049/ /pubmed/33240655 http://dx.doi.org/10.7717/peerj.10346 Text en ©2020 Ramakrishna et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Ramakrishna, Ramanaesh Rao
Abd Hamid, Zariyantey
Wan Zaki, Wan Mimi Diyana
Huddin, Aqilah Baseri
Mathialagan, Ramya
Stem cell imaging through convolutional neural networks: current issues and future directions in artificial intelligence technology
title Stem cell imaging through convolutional neural networks: current issues and future directions in artificial intelligence technology
title_full Stem cell imaging through convolutional neural networks: current issues and future directions in artificial intelligence technology
title_fullStr Stem cell imaging through convolutional neural networks: current issues and future directions in artificial intelligence technology
title_full_unstemmed Stem cell imaging through convolutional neural networks: current issues and future directions in artificial intelligence technology
title_short Stem cell imaging through convolutional neural networks: current issues and future directions in artificial intelligence technology
title_sort stem cell imaging through convolutional neural networks: current issues and future directions in artificial intelligence technology
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7680049/
https://www.ncbi.nlm.nih.gov/pubmed/33240655
http://dx.doi.org/10.7717/peerj.10346
work_keys_str_mv AT ramakrishnaramanaeshrao stemcellimagingthroughconvolutionalneuralnetworkscurrentissuesandfuturedirectionsinartificialintelligencetechnology
AT abdhamidzariyantey stemcellimagingthroughconvolutionalneuralnetworkscurrentissuesandfuturedirectionsinartificialintelligencetechnology
AT wanzakiwanmimidiyana stemcellimagingthroughconvolutionalneuralnetworkscurrentissuesandfuturedirectionsinartificialintelligencetechnology
AT huddinaqilahbaseri stemcellimagingthroughconvolutionalneuralnetworkscurrentissuesandfuturedirectionsinartificialintelligencetechnology
AT mathialaganramya stemcellimagingthroughconvolutionalneuralnetworkscurrentissuesandfuturedirectionsinartificialintelligencetechnology