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Thermal and hydrodynamic properties of coronavirus at various temperature and pressure via molecular dynamics approach

COVID-19 is an epidemic virus arising from a freshly discovered coronavirus. Most people involved with the coronavirus will experience slight to moderate respiratory disease and recover without needing particular therapy. In this work, the atomic stability of the coronavirus at different thermodynam...

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Autores principales: Malekahmadi, Omid, Zarei, Akbar, Botlani Esfahani, Mohammad Behzad, Hekmatifar, Maboud, Sabetvand, Roozbeh, Marjani, Azam, Bach, Quang-Vu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7680216/
https://www.ncbi.nlm.nih.gov/pubmed/33250660
http://dx.doi.org/10.1007/s10973-020-10353-2
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author Malekahmadi, Omid
Zarei, Akbar
Botlani Esfahani, Mohammad Behzad
Hekmatifar, Maboud
Sabetvand, Roozbeh
Marjani, Azam
Bach, Quang-Vu
author_facet Malekahmadi, Omid
Zarei, Akbar
Botlani Esfahani, Mohammad Behzad
Hekmatifar, Maboud
Sabetvand, Roozbeh
Marjani, Azam
Bach, Quang-Vu
author_sort Malekahmadi, Omid
collection PubMed
description COVID-19 is an epidemic virus arising from a freshly discovered coronavirus. Most people involved with the coronavirus will experience slight to moderate respiratory disease and recover without needing particular therapy. In this work, the atomic stability of the coronavirus at different thermodynamic properties such as temperature and pressure, was studied. For this purpose, the manner of this virus by atomic precession was described with a molecular dynamics approach. For the atomic stability of coronavirus description, physical properties such as temperature, total energy, volume variation, and atomic force of this structure were reported. In molecular dynamics approach, coronavirus is precisely simulated via S, O, N, and C atoms and performed Dreiding force field to describe these atoms interaction in the virus. Simulation results show that coronavirus stability has reciprocal relation with atomic temperature and pressure. Numerically, after 2.5 ns simulation, the potential energy varies from − 31,163 to − 26,041 eV by temperature changes from 300 to 400 K. Furthermore, this physical parameter decreases to − 28,045 eV rate at 300 K and 2 bar pressure. The volume of coronavirus is another crucial parameter to the stability description of this structure. The simulation shows that coronavirus volume 92% and 14% increases by 100 K and 2 bar variation of simulation temperature and pressure, respectively.
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spelling pubmed-76802162020-11-23 Thermal and hydrodynamic properties of coronavirus at various temperature and pressure via molecular dynamics approach Malekahmadi, Omid Zarei, Akbar Botlani Esfahani, Mohammad Behzad Hekmatifar, Maboud Sabetvand, Roozbeh Marjani, Azam Bach, Quang-Vu J Therm Anal Calorim Article COVID-19 is an epidemic virus arising from a freshly discovered coronavirus. Most people involved with the coronavirus will experience slight to moderate respiratory disease and recover without needing particular therapy. In this work, the atomic stability of the coronavirus at different thermodynamic properties such as temperature and pressure, was studied. For this purpose, the manner of this virus by atomic precession was described with a molecular dynamics approach. For the atomic stability of coronavirus description, physical properties such as temperature, total energy, volume variation, and atomic force of this structure were reported. In molecular dynamics approach, coronavirus is precisely simulated via S, O, N, and C atoms and performed Dreiding force field to describe these atoms interaction in the virus. Simulation results show that coronavirus stability has reciprocal relation with atomic temperature and pressure. Numerically, after 2.5 ns simulation, the potential energy varies from − 31,163 to − 26,041 eV by temperature changes from 300 to 400 K. Furthermore, this physical parameter decreases to − 28,045 eV rate at 300 K and 2 bar pressure. The volume of coronavirus is another crucial parameter to the stability description of this structure. The simulation shows that coronavirus volume 92% and 14% increases by 100 K and 2 bar variation of simulation temperature and pressure, respectively. Springer International Publishing 2020-11-21 2021 /pmc/articles/PMC7680216/ /pubmed/33250660 http://dx.doi.org/10.1007/s10973-020-10353-2 Text en © Akadémiai Kiadó, Budapest, Hungary 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Malekahmadi, Omid
Zarei, Akbar
Botlani Esfahani, Mohammad Behzad
Hekmatifar, Maboud
Sabetvand, Roozbeh
Marjani, Azam
Bach, Quang-Vu
Thermal and hydrodynamic properties of coronavirus at various temperature and pressure via molecular dynamics approach
title Thermal and hydrodynamic properties of coronavirus at various temperature and pressure via molecular dynamics approach
title_full Thermal and hydrodynamic properties of coronavirus at various temperature and pressure via molecular dynamics approach
title_fullStr Thermal and hydrodynamic properties of coronavirus at various temperature and pressure via molecular dynamics approach
title_full_unstemmed Thermal and hydrodynamic properties of coronavirus at various temperature and pressure via molecular dynamics approach
title_short Thermal and hydrodynamic properties of coronavirus at various temperature and pressure via molecular dynamics approach
title_sort thermal and hydrodynamic properties of coronavirus at various temperature and pressure via molecular dynamics approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7680216/
https://www.ncbi.nlm.nih.gov/pubmed/33250660
http://dx.doi.org/10.1007/s10973-020-10353-2
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