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Identification of toxic mold species through Raman spectroscopy of fungal conidia
We use a 785 nm shifted excitation Raman difference (SERDS) technique to measure the Raman spectra of the conidia of 10 mold species of especial toxicological, medical, and industrial importance, including Stachybotrys chartarum, Penicillium chrysogenum, Aspergillus fumigatus, Aspergillus flavus, As...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7682877/ https://www.ncbi.nlm.nih.gov/pubmed/33227000 http://dx.doi.org/10.1371/journal.pone.0242361 |
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author | Strycker, Benjamin D. Han, Zehua Duan, Zheng Commer, Blake Wang, Kai Shaw, Brian D. Sokolov, Alexei V. Scully, Marlan O. |
author_facet | Strycker, Benjamin D. Han, Zehua Duan, Zheng Commer, Blake Wang, Kai Shaw, Brian D. Sokolov, Alexei V. Scully, Marlan O. |
author_sort | Strycker, Benjamin D. |
collection | PubMed |
description | We use a 785 nm shifted excitation Raman difference (SERDS) technique to measure the Raman spectra of the conidia of 10 mold species of especial toxicological, medical, and industrial importance, including Stachybotrys chartarum, Penicillium chrysogenum, Aspergillus fumigatus, Aspergillus flavus, Aspergillus oryzae, Aspergillus niger, and others. We find that both the pure Raman and fluorescence signals support the hypothesis that for an excitation wavelength of 785 nm the Raman signal originates from the melanin pigments bound within the cell wall of the conidium. In addition, the major features of the pure Raman spectra group into profiles that we hypothesize may be due to differences in the complex melanin biosynthesis pathways. We then combine the Raman spectral data with neural network models to predict species classification with an accuracy above 99%. Finally, the Raman spectral data of all species investigated is made freely available for download and use. |
format | Online Article Text |
id | pubmed-7682877 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-76828772020-12-02 Identification of toxic mold species through Raman spectroscopy of fungal conidia Strycker, Benjamin D. Han, Zehua Duan, Zheng Commer, Blake Wang, Kai Shaw, Brian D. Sokolov, Alexei V. Scully, Marlan O. PLoS One Research Article We use a 785 nm shifted excitation Raman difference (SERDS) technique to measure the Raman spectra of the conidia of 10 mold species of especial toxicological, medical, and industrial importance, including Stachybotrys chartarum, Penicillium chrysogenum, Aspergillus fumigatus, Aspergillus flavus, Aspergillus oryzae, Aspergillus niger, and others. We find that both the pure Raman and fluorescence signals support the hypothesis that for an excitation wavelength of 785 nm the Raman signal originates from the melanin pigments bound within the cell wall of the conidium. In addition, the major features of the pure Raman spectra group into profiles that we hypothesize may be due to differences in the complex melanin biosynthesis pathways. We then combine the Raman spectral data with neural network models to predict species classification with an accuracy above 99%. Finally, the Raman spectral data of all species investigated is made freely available for download and use. Public Library of Science 2020-11-23 /pmc/articles/PMC7682877/ /pubmed/33227000 http://dx.doi.org/10.1371/journal.pone.0242361 Text en © 2020 Strycker et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Strycker, Benjamin D. Han, Zehua Duan, Zheng Commer, Blake Wang, Kai Shaw, Brian D. Sokolov, Alexei V. Scully, Marlan O. Identification of toxic mold species through Raman spectroscopy of fungal conidia |
title | Identification of toxic mold species through Raman spectroscopy of fungal conidia |
title_full | Identification of toxic mold species through Raman spectroscopy of fungal conidia |
title_fullStr | Identification of toxic mold species through Raman spectroscopy of fungal conidia |
title_full_unstemmed | Identification of toxic mold species through Raman spectroscopy of fungal conidia |
title_short | Identification of toxic mold species through Raman spectroscopy of fungal conidia |
title_sort | identification of toxic mold species through raman spectroscopy of fungal conidia |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7682877/ https://www.ncbi.nlm.nih.gov/pubmed/33227000 http://dx.doi.org/10.1371/journal.pone.0242361 |
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