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Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies
The origin and evolution of SARS-CoV-2 has been an important issue in tackling COVID-19. Research on these topics would enhance our knowledge of this virus and help us develop vaccines or predict its paths of mutations. There are many theoretical and clinical researches in this area. In this article...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Hindawi
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7683162/ https://www.ncbi.nlm.nih.gov/pubmed/33273962 http://dx.doi.org/10.1155/2020/8819942 |
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author | Chen, Ray-Ming |
author_facet | Chen, Ray-Ming |
author_sort | Chen, Ray-Ming |
collection | PubMed |
description | The origin and evolution of SARS-CoV-2 has been an important issue in tackling COVID-19. Research on these topics would enhance our knowledge of this virus and help us develop vaccines or predict its paths of mutations. There are many theoretical and clinical researches in this area. In this article, we devise a structural metric which directly measures the structural differences between any two nucleotide sequences. In order to explore the mechanisms of how the evolution works, we associate the nucleotide sequences of SARS-CoV-2 and its related families with the degrees of randomness. Since the distances between randomly generated nucleotide sequences are very concentrated around a mean with low variance, they are qualified as good candidates for the fundamental reference. Such reference could then be applied to measure the randomness of other Coronaviridae sequences. Our findings show that the relative randomness ratios are very consistent and concentrated. This result indicates their randomness is very stable and predictable. The findings also reveal the evolutional behaviours between the Coronaviridae and all its subfamilies. |
format | Online Article Text |
id | pubmed-7683162 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-76831622020-12-02 Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies Chen, Ray-Ming Comput Math Methods Med Research Article The origin and evolution of SARS-CoV-2 has been an important issue in tackling COVID-19. Research on these topics would enhance our knowledge of this virus and help us develop vaccines or predict its paths of mutations. There are many theoretical and clinical researches in this area. In this article, we devise a structural metric which directly measures the structural differences between any two nucleotide sequences. In order to explore the mechanisms of how the evolution works, we associate the nucleotide sequences of SARS-CoV-2 and its related families with the degrees of randomness. Since the distances between randomly generated nucleotide sequences are very concentrated around a mean with low variance, they are qualified as good candidates for the fundamental reference. Such reference could then be applied to measure the randomness of other Coronaviridae sequences. Our findings show that the relative randomness ratios are very consistent and concentrated. This result indicates their randomness is very stable and predictable. The findings also reveal the evolutional behaviours between the Coronaviridae and all its subfamilies. Hindawi 2020-11-14 /pmc/articles/PMC7683162/ /pubmed/33273962 http://dx.doi.org/10.1155/2020/8819942 Text en Copyright © 2020 Ray-Ming Chen. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Chen, Ray-Ming Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies |
title | Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies |
title_full | Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies |
title_fullStr | Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies |
title_full_unstemmed | Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies |
title_short | Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies |
title_sort | randomness for nucleotide sequences of sars-cov-2 and its related subfamilies |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7683162/ https://www.ncbi.nlm.nih.gov/pubmed/33273962 http://dx.doi.org/10.1155/2020/8819942 |
work_keys_str_mv | AT chenrayming randomnessfornucleotidesequencesofsarscov2anditsrelatedsubfamilies |