Cargando…

Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies

The origin and evolution of SARS-CoV-2 has been an important issue in tackling COVID-19. Research on these topics would enhance our knowledge of this virus and help us develop vaccines or predict its paths of mutations. There are many theoretical and clinical researches in this area. In this article...

Descripción completa

Detalles Bibliográficos
Autor principal: Chen, Ray-Ming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7683162/
https://www.ncbi.nlm.nih.gov/pubmed/33273962
http://dx.doi.org/10.1155/2020/8819942
_version_ 1783612820265369600
author Chen, Ray-Ming
author_facet Chen, Ray-Ming
author_sort Chen, Ray-Ming
collection PubMed
description The origin and evolution of SARS-CoV-2 has been an important issue in tackling COVID-19. Research on these topics would enhance our knowledge of this virus and help us develop vaccines or predict its paths of mutations. There are many theoretical and clinical researches in this area. In this article, we devise a structural metric which directly measures the structural differences between any two nucleotide sequences. In order to explore the mechanisms of how the evolution works, we associate the nucleotide sequences of SARS-CoV-2 and its related families with the degrees of randomness. Since the distances between randomly generated nucleotide sequences are very concentrated around a mean with low variance, they are qualified as good candidates for the fundamental reference. Such reference could then be applied to measure the randomness of other Coronaviridae sequences. Our findings show that the relative randomness ratios are very consistent and concentrated. This result indicates their randomness is very stable and predictable. The findings also reveal the evolutional behaviours between the Coronaviridae and all its subfamilies.
format Online
Article
Text
id pubmed-7683162
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-76831622020-12-02 Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies Chen, Ray-Ming Comput Math Methods Med Research Article The origin and evolution of SARS-CoV-2 has been an important issue in tackling COVID-19. Research on these topics would enhance our knowledge of this virus and help us develop vaccines or predict its paths of mutations. There are many theoretical and clinical researches in this area. In this article, we devise a structural metric which directly measures the structural differences between any two nucleotide sequences. In order to explore the mechanisms of how the evolution works, we associate the nucleotide sequences of SARS-CoV-2 and its related families with the degrees of randomness. Since the distances between randomly generated nucleotide sequences are very concentrated around a mean with low variance, they are qualified as good candidates for the fundamental reference. Such reference could then be applied to measure the randomness of other Coronaviridae sequences. Our findings show that the relative randomness ratios are very consistent and concentrated. This result indicates their randomness is very stable and predictable. The findings also reveal the evolutional behaviours between the Coronaviridae and all its subfamilies. Hindawi 2020-11-14 /pmc/articles/PMC7683162/ /pubmed/33273962 http://dx.doi.org/10.1155/2020/8819942 Text en Copyright © 2020 Ray-Ming Chen. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Chen, Ray-Ming
Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies
title Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies
title_full Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies
title_fullStr Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies
title_full_unstemmed Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies
title_short Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related Subfamilies
title_sort randomness for nucleotide sequences of sars-cov-2 and its related subfamilies
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7683162/
https://www.ncbi.nlm.nih.gov/pubmed/33273962
http://dx.doi.org/10.1155/2020/8819942
work_keys_str_mv AT chenrayming randomnessfornucleotidesequencesofsarscov2anditsrelatedsubfamilies