Cargando…

CcpNmr AnalysisScreen, a new software programme with dedicated automated analysis tools for fragment-based drug discovery by NMR

Fragment-based drug discovery or FBDD is one of the main methods used by industry and academia for identifying drug-like candidates in early stages of drug discovery. NMR has a significant impact at any stage of the drug discovery process, from primary identification of small molecules to the elucid...

Descripción completa

Detalles Bibliográficos
Autores principales: Mureddu, Luca G., Ragan, Timothy J., Brooksbank, Edward J., Vuister, Geerten W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7683461/
https://www.ncbi.nlm.nih.gov/pubmed/32638146
http://dx.doi.org/10.1007/s10858-020-00321-1
_version_ 1783612883053051904
author Mureddu, Luca G.
Ragan, Timothy J.
Brooksbank, Edward J.
Vuister, Geerten W.
author_facet Mureddu, Luca G.
Ragan, Timothy J.
Brooksbank, Edward J.
Vuister, Geerten W.
author_sort Mureddu, Luca G.
collection PubMed
description Fragment-based drug discovery or FBDD is one of the main methods used by industry and academia for identifying drug-like candidates in early stages of drug discovery. NMR has a significant impact at any stage of the drug discovery process, from primary identification of small molecules to the elucidation of binding modes for guiding optimisations. The essence of NMR as an analytical tool, however, requires the processing and analysis of relatively large amounts of single data items, e.g. spectra, which can be daunting when managed manually. One bottleneck in FBDD by NMR is a lack of adequate and well-integrated resources for NMR data analysis that are freely available to the community. Thus, scientists typically resort to manually inspecting large datasets and relying predominantly on subjective interpretations. In this manuscript, we present CcpNmr AnalysisScreen, a software package that provides computational tools for automated analysis of FBDD data by NMR. We outline how the quality of collected spectra can be evaluated quickly, and how robust workflows can be optimised for reliable and rapid hit identification. With an intuitive graphical user interface and powerful algorithms, AnalysisScreen enables easy analysis of the large datasets needed in the early process of drug discovery by NMR. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10858-020-00321-1) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-7683461
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Springer Netherlands
record_format MEDLINE/PubMed
spelling pubmed-76834612020-11-30 CcpNmr AnalysisScreen, a new software programme with dedicated automated analysis tools for fragment-based drug discovery by NMR Mureddu, Luca G. Ragan, Timothy J. Brooksbank, Edward J. Vuister, Geerten W. J Biomol NMR Article Fragment-based drug discovery or FBDD is one of the main methods used by industry and academia for identifying drug-like candidates in early stages of drug discovery. NMR has a significant impact at any stage of the drug discovery process, from primary identification of small molecules to the elucidation of binding modes for guiding optimisations. The essence of NMR as an analytical tool, however, requires the processing and analysis of relatively large amounts of single data items, e.g. spectra, which can be daunting when managed manually. One bottleneck in FBDD by NMR is a lack of adequate and well-integrated resources for NMR data analysis that are freely available to the community. Thus, scientists typically resort to manually inspecting large datasets and relying predominantly on subjective interpretations. In this manuscript, we present CcpNmr AnalysisScreen, a software package that provides computational tools for automated analysis of FBDD data by NMR. We outline how the quality of collected spectra can be evaluated quickly, and how robust workflows can be optimised for reliable and rapid hit identification. With an intuitive graphical user interface and powerful algorithms, AnalysisScreen enables easy analysis of the large datasets needed in the early process of drug discovery by NMR. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10858-020-00321-1) contains supplementary material, which is available to authorized users. Springer Netherlands 2020-07-07 2020 /pmc/articles/PMC7683461/ /pubmed/32638146 http://dx.doi.org/10.1007/s10858-020-00321-1 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Mureddu, Luca G.
Ragan, Timothy J.
Brooksbank, Edward J.
Vuister, Geerten W.
CcpNmr AnalysisScreen, a new software programme with dedicated automated analysis tools for fragment-based drug discovery by NMR
title CcpNmr AnalysisScreen, a new software programme with dedicated automated analysis tools for fragment-based drug discovery by NMR
title_full CcpNmr AnalysisScreen, a new software programme with dedicated automated analysis tools for fragment-based drug discovery by NMR
title_fullStr CcpNmr AnalysisScreen, a new software programme with dedicated automated analysis tools for fragment-based drug discovery by NMR
title_full_unstemmed CcpNmr AnalysisScreen, a new software programme with dedicated automated analysis tools for fragment-based drug discovery by NMR
title_short CcpNmr AnalysisScreen, a new software programme with dedicated automated analysis tools for fragment-based drug discovery by NMR
title_sort ccpnmr analysisscreen, a new software programme with dedicated automated analysis tools for fragment-based drug discovery by nmr
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7683461/
https://www.ncbi.nlm.nih.gov/pubmed/32638146
http://dx.doi.org/10.1007/s10858-020-00321-1
work_keys_str_mv AT mureddulucag ccpnmranalysisscreenanewsoftwareprogrammewithdedicatedautomatedanalysistoolsforfragmentbaseddrugdiscoverybynmr
AT ragantimothyj ccpnmranalysisscreenanewsoftwareprogrammewithdedicatedautomatedanalysistoolsforfragmentbaseddrugdiscoverybynmr
AT brooksbankedwardj ccpnmranalysisscreenanewsoftwareprogrammewithdedicatedautomatedanalysistoolsforfragmentbaseddrugdiscoverybynmr
AT vuistergeertenw ccpnmranalysisscreenanewsoftwareprogrammewithdedicatedautomatedanalysistoolsforfragmentbaseddrugdiscoverybynmr