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Modeling of Chemical Reaction Systems with Detailed Balance Using Gradient Structures
We consider various modeling levels for spatially homogeneous chemical reaction systems, namely the chemical master equation, the chemical Langevin dynamics, and the reaction-rate equation. Throughout we restrict our study to the case where the microscopic system satisfies the detailed-balance condi...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer US
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7683506/ https://www.ncbi.nlm.nih.gov/pubmed/33268907 http://dx.doi.org/10.1007/s10955-020-02663-4 |
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author | Maas, Jan Mielke, Alexander |
author_facet | Maas, Jan Mielke, Alexander |
author_sort | Maas, Jan |
collection | PubMed |
description | We consider various modeling levels for spatially homogeneous chemical reaction systems, namely the chemical master equation, the chemical Langevin dynamics, and the reaction-rate equation. Throughout we restrict our study to the case where the microscopic system satisfies the detailed-balance condition. The latter allows us to enrich the systems with a gradient structure, i.e. the evolution is given by a gradient-flow equation. We present the arising links between the associated gradient structures that are driven by the relative entropy of the detailed-balance steady state. The limit of large volumes is studied in the sense of evolutionary [Formula: see text] -convergence of gradient flows. Moreover, we use the gradient structures to derive hybrid models for coupling different modeling levels. |
format | Online Article Text |
id | pubmed-7683506 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-76835062020-11-30 Modeling of Chemical Reaction Systems with Detailed Balance Using Gradient Structures Maas, Jan Mielke, Alexander J Stat Phys Article We consider various modeling levels for spatially homogeneous chemical reaction systems, namely the chemical master equation, the chemical Langevin dynamics, and the reaction-rate equation. Throughout we restrict our study to the case where the microscopic system satisfies the detailed-balance condition. The latter allows us to enrich the systems with a gradient structure, i.e. the evolution is given by a gradient-flow equation. We present the arising links between the associated gradient structures that are driven by the relative entropy of the detailed-balance steady state. The limit of large volumes is studied in the sense of evolutionary [Formula: see text] -convergence of gradient flows. Moreover, we use the gradient structures to derive hybrid models for coupling different modeling levels. Springer US 2020-11-06 2020 /pmc/articles/PMC7683506/ /pubmed/33268907 http://dx.doi.org/10.1007/s10955-020-02663-4 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Maas, Jan Mielke, Alexander Modeling of Chemical Reaction Systems with Detailed Balance Using Gradient Structures |
title | Modeling of Chemical Reaction Systems with Detailed Balance Using Gradient Structures |
title_full | Modeling of Chemical Reaction Systems with Detailed Balance Using Gradient Structures |
title_fullStr | Modeling of Chemical Reaction Systems with Detailed Balance Using Gradient Structures |
title_full_unstemmed | Modeling of Chemical Reaction Systems with Detailed Balance Using Gradient Structures |
title_short | Modeling of Chemical Reaction Systems with Detailed Balance Using Gradient Structures |
title_sort | modeling of chemical reaction systems with detailed balance using gradient structures |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7683506/ https://www.ncbi.nlm.nih.gov/pubmed/33268907 http://dx.doi.org/10.1007/s10955-020-02663-4 |
work_keys_str_mv | AT maasjan modelingofchemicalreactionsystemswithdetailedbalanceusinggradientstructures AT mielkealexander modelingofchemicalreactionsystemswithdetailedbalanceusinggradientstructures |