Cargando…

Expression of m6A Regulators Correlated With Immune Microenvironment Predicts Therapeutic Efficacy and Prognosis in Gliomas

BACKGROUND: N6-methyladenosine (m6A) RNA methylation and tumor immune microenvironment played crucial roles in cancer development. However, their association in gliomas remains to be fully elucidated. METHODS: A total of 2144 glioma patients from CGGA, TCGA, and Rembrandt databases were extracted in...

Descripción completa

Detalles Bibliográficos
Autores principales: Xu, Shengchao, Tang, Lu, Dai, Gan, Luo, Chengke, Liu, Zhixiong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7683617/
https://www.ncbi.nlm.nih.gov/pubmed/33240891
http://dx.doi.org/10.3389/fcell.2020.594112
_version_ 1783612919702880256
author Xu, Shengchao
Tang, Lu
Dai, Gan
Luo, Chengke
Liu, Zhixiong
author_facet Xu, Shengchao
Tang, Lu
Dai, Gan
Luo, Chengke
Liu, Zhixiong
author_sort Xu, Shengchao
collection PubMed
description BACKGROUND: N6-methyladenosine (m6A) RNA methylation and tumor immune microenvironment played crucial roles in cancer development. However, their association in gliomas remains to be fully elucidated. METHODS: A total of 2144 glioma patients from CGGA, TCGA, and Rembrandt databases were extracted in our study, in which 325 were set as the training cohort and 1819 were defined as the validation cohort. Survival differences evaluated by Kaplan–Meier analysis between groups. Patients were clustered into subgroups by consensus clustering. ESTIMATE algorithm was applied to calculate immune and stroma scores. The infiltration of immune cells was characterized by TIMER algorithm. The risk signature was constructed by multivariate Cox regression analysis. RESULTS: Nineteen m6A regulators were highly expressed in glioma tissues. The expression of m6A regulators was associated with prognoses, grade, isocitrate dehydrogenase (IDH) status, and 1p19q status of gliomas. Two subgroups were identified by consensus clustering, in which cluster 1 was associated with favorable prognosis, high stroma and immune scores, and high immune infiltration. When the patients were divided into high risk and low risk groups based on their risk scores, we found that patients in the high risk group had poor prognoses. Besides, patients in the high risk group had a higher stroma and immune scores, and higher abundance of immune infiltration. These results were further verified in the validation cohort, which contained three independent datasets. Moreover, patients in the low risk group enjoyed better prognoses without chemoradiotherapy or single chemotherapy. CONCLUSION: Our study revealed that m6A regulators could predict the prognosis and therapeutic efficacy, and were also associated with the immune microenvironment in gliomas.
format Online
Article
Text
id pubmed-7683617
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-76836172020-11-24 Expression of m6A Regulators Correlated With Immune Microenvironment Predicts Therapeutic Efficacy and Prognosis in Gliomas Xu, Shengchao Tang, Lu Dai, Gan Luo, Chengke Liu, Zhixiong Front Cell Dev Biol Cell and Developmental Biology BACKGROUND: N6-methyladenosine (m6A) RNA methylation and tumor immune microenvironment played crucial roles in cancer development. However, their association in gliomas remains to be fully elucidated. METHODS: A total of 2144 glioma patients from CGGA, TCGA, and Rembrandt databases were extracted in our study, in which 325 were set as the training cohort and 1819 were defined as the validation cohort. Survival differences evaluated by Kaplan–Meier analysis between groups. Patients were clustered into subgroups by consensus clustering. ESTIMATE algorithm was applied to calculate immune and stroma scores. The infiltration of immune cells was characterized by TIMER algorithm. The risk signature was constructed by multivariate Cox regression analysis. RESULTS: Nineteen m6A regulators were highly expressed in glioma tissues. The expression of m6A regulators was associated with prognoses, grade, isocitrate dehydrogenase (IDH) status, and 1p19q status of gliomas. Two subgroups were identified by consensus clustering, in which cluster 1 was associated with favorable prognosis, high stroma and immune scores, and high immune infiltration. When the patients were divided into high risk and low risk groups based on their risk scores, we found that patients in the high risk group had poor prognoses. Besides, patients in the high risk group had a higher stroma and immune scores, and higher abundance of immune infiltration. These results were further verified in the validation cohort, which contained three independent datasets. Moreover, patients in the low risk group enjoyed better prognoses without chemoradiotherapy or single chemotherapy. CONCLUSION: Our study revealed that m6A regulators could predict the prognosis and therapeutic efficacy, and were also associated with the immune microenvironment in gliomas. Frontiers Media S.A. 2020-11-10 /pmc/articles/PMC7683617/ /pubmed/33240891 http://dx.doi.org/10.3389/fcell.2020.594112 Text en Copyright © 2020 Xu, Tang, Dai, Luo and Liu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Xu, Shengchao
Tang, Lu
Dai, Gan
Luo, Chengke
Liu, Zhixiong
Expression of m6A Regulators Correlated With Immune Microenvironment Predicts Therapeutic Efficacy and Prognosis in Gliomas
title Expression of m6A Regulators Correlated With Immune Microenvironment Predicts Therapeutic Efficacy and Prognosis in Gliomas
title_full Expression of m6A Regulators Correlated With Immune Microenvironment Predicts Therapeutic Efficacy and Prognosis in Gliomas
title_fullStr Expression of m6A Regulators Correlated With Immune Microenvironment Predicts Therapeutic Efficacy and Prognosis in Gliomas
title_full_unstemmed Expression of m6A Regulators Correlated With Immune Microenvironment Predicts Therapeutic Efficacy and Prognosis in Gliomas
title_short Expression of m6A Regulators Correlated With Immune Microenvironment Predicts Therapeutic Efficacy and Prognosis in Gliomas
title_sort expression of m6a regulators correlated with immune microenvironment predicts therapeutic efficacy and prognosis in gliomas
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7683617/
https://www.ncbi.nlm.nih.gov/pubmed/33240891
http://dx.doi.org/10.3389/fcell.2020.594112
work_keys_str_mv AT xushengchao expressionofm6aregulatorscorrelatedwithimmunemicroenvironmentpredictstherapeuticefficacyandprognosisingliomas
AT tanglu expressionofm6aregulatorscorrelatedwithimmunemicroenvironmentpredictstherapeuticefficacyandprognosisingliomas
AT daigan expressionofm6aregulatorscorrelatedwithimmunemicroenvironmentpredictstherapeuticefficacyandprognosisingliomas
AT luochengke expressionofm6aregulatorscorrelatedwithimmunemicroenvironmentpredictstherapeuticefficacyandprognosisingliomas
AT liuzhixiong expressionofm6aregulatorscorrelatedwithimmunemicroenvironmentpredictstherapeuticefficacyandprognosisingliomas