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An event based topic learning pipeline for neuroimaging literature mining

Neuroimaging text mining extracts knowledge from neuroimaging texts and has received widespread attention. Topic learning is an important research focus of neuroimaging text mining. However, current neuroimaging topic learning researches mainly used traditional probability topic models to extract to...

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Autores principales: Chen, Lihong, Yan, Jianzhuo, Chen, Jianhui, Sheng, Ying, Xu, Zhe, Mahmud, Mufti
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7683633/
https://www.ncbi.nlm.nih.gov/pubmed/33226547
http://dx.doi.org/10.1186/s40708-020-00121-1
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author Chen, Lihong
Yan, Jianzhuo
Chen, Jianhui
Sheng, Ying
Xu, Zhe
Mahmud, Mufti
author_facet Chen, Lihong
Yan, Jianzhuo
Chen, Jianhui
Sheng, Ying
Xu, Zhe
Mahmud, Mufti
author_sort Chen, Lihong
collection PubMed
description Neuroimaging text mining extracts knowledge from neuroimaging texts and has received widespread attention. Topic learning is an important research focus of neuroimaging text mining. However, current neuroimaging topic learning researches mainly used traditional probability topic models to extract topics from literature and cannot obtain high-quality neuroimaging topics. The existing topic learning methods also cannot meet the requirements of topic learning oriented to full-text neuroimaging literature. In this paper, three types of neuroimaging research topic events are defined to describe the process and result of neuroimaging researches. An event based topic learning pipeline, called neuroimaging Event-BTM, is proposed to realize topic learning from full-text neuroimaging literature. The experimental results on the PLoS One data set show that the accuracy and completeness of the proposed method are significantly better than the existing main topic learning methods.
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spelling pubmed-76836332020-11-27 An event based topic learning pipeline for neuroimaging literature mining Chen, Lihong Yan, Jianzhuo Chen, Jianhui Sheng, Ying Xu, Zhe Mahmud, Mufti Brain Inform Research Neuroimaging text mining extracts knowledge from neuroimaging texts and has received widespread attention. Topic learning is an important research focus of neuroimaging text mining. However, current neuroimaging topic learning researches mainly used traditional probability topic models to extract topics from literature and cannot obtain high-quality neuroimaging topics. The existing topic learning methods also cannot meet the requirements of topic learning oriented to full-text neuroimaging literature. In this paper, three types of neuroimaging research topic events are defined to describe the process and result of neuroimaging researches. An event based topic learning pipeline, called neuroimaging Event-BTM, is proposed to realize topic learning from full-text neuroimaging literature. The experimental results on the PLoS One data set show that the accuracy and completeness of the proposed method are significantly better than the existing main topic learning methods. Springer Berlin Heidelberg 2020-11-23 /pmc/articles/PMC7683633/ /pubmed/33226547 http://dx.doi.org/10.1186/s40708-020-00121-1 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Research
Chen, Lihong
Yan, Jianzhuo
Chen, Jianhui
Sheng, Ying
Xu, Zhe
Mahmud, Mufti
An event based topic learning pipeline for neuroimaging literature mining
title An event based topic learning pipeline for neuroimaging literature mining
title_full An event based topic learning pipeline for neuroimaging literature mining
title_fullStr An event based topic learning pipeline for neuroimaging literature mining
title_full_unstemmed An event based topic learning pipeline for neuroimaging literature mining
title_short An event based topic learning pipeline for neuroimaging literature mining
title_sort event based topic learning pipeline for neuroimaging literature mining
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7683633/
https://www.ncbi.nlm.nih.gov/pubmed/33226547
http://dx.doi.org/10.1186/s40708-020-00121-1
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