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A comparison of machine learning methods for survival analysis of high-dimensional clinical data for dementia prediction

Data collected from clinical trials and cohort studies, such as dementia studies, are often high-dimensional, censored, heterogeneous and contain missing information, presenting challenges to traditional statistical analysis. There is an urgent need for methods that can overcome these challenges to...

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Autores principales: Spooner, Annette, Chen, Emily, Sowmya, Arcot, Sachdev, Perminder, Kochan, Nicole A., Trollor, Julian, Brodaty, Henry
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7683682/
https://www.ncbi.nlm.nih.gov/pubmed/33230128
http://dx.doi.org/10.1038/s41598-020-77220-w
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author Spooner, Annette
Chen, Emily
Sowmya, Arcot
Sachdev, Perminder
Kochan, Nicole A.
Trollor, Julian
Brodaty, Henry
author_facet Spooner, Annette
Chen, Emily
Sowmya, Arcot
Sachdev, Perminder
Kochan, Nicole A.
Trollor, Julian
Brodaty, Henry
author_sort Spooner, Annette
collection PubMed
description Data collected from clinical trials and cohort studies, such as dementia studies, are often high-dimensional, censored, heterogeneous and contain missing information, presenting challenges to traditional statistical analysis. There is an urgent need for methods that can overcome these challenges to model this complex data. At present there is no cure for dementia and no treatment that can successfully change the course of the disease. Machine learning models that can predict the time until a patient develops dementia are important tools in helping understand dementia risks and can give more accurate results than traditional statistical methods when modelling high-dimensional, heterogeneous, clinical data. This work compares the performance and stability of ten machine learning algorithms, combined with eight feature selection methods, capable of performing survival analysis of high-dimensional, heterogeneous, clinical data. We developed models that predict survival to dementia using baseline data from two different studies. The Sydney Memory and Ageing Study (MAS) is a longitudinal cohort study of 1037 participants, aged 70–90 years, that aims to determine the effects of ageing on cognition. The Alzheimer's Disease Neuroimaging Initiative (ADNI) is a longitudinal study aimed at identifying biomarkers for the early detection and tracking of Alzheimer's disease. Using the concordance index as a measure of performance, our models achieve maximum performance values of 0.82 for MAS and 0.93 For ADNI.
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spelling pubmed-76836822020-11-24 A comparison of machine learning methods for survival analysis of high-dimensional clinical data for dementia prediction Spooner, Annette Chen, Emily Sowmya, Arcot Sachdev, Perminder Kochan, Nicole A. Trollor, Julian Brodaty, Henry Sci Rep Article Data collected from clinical trials and cohort studies, such as dementia studies, are often high-dimensional, censored, heterogeneous and contain missing information, presenting challenges to traditional statistical analysis. There is an urgent need for methods that can overcome these challenges to model this complex data. At present there is no cure for dementia and no treatment that can successfully change the course of the disease. Machine learning models that can predict the time until a patient develops dementia are important tools in helping understand dementia risks and can give more accurate results than traditional statistical methods when modelling high-dimensional, heterogeneous, clinical data. This work compares the performance and stability of ten machine learning algorithms, combined with eight feature selection methods, capable of performing survival analysis of high-dimensional, heterogeneous, clinical data. We developed models that predict survival to dementia using baseline data from two different studies. The Sydney Memory and Ageing Study (MAS) is a longitudinal cohort study of 1037 participants, aged 70–90 years, that aims to determine the effects of ageing on cognition. The Alzheimer's Disease Neuroimaging Initiative (ADNI) is a longitudinal study aimed at identifying biomarkers for the early detection and tracking of Alzheimer's disease. Using the concordance index as a measure of performance, our models achieve maximum performance values of 0.82 for MAS and 0.93 For ADNI. Nature Publishing Group UK 2020-11-23 /pmc/articles/PMC7683682/ /pubmed/33230128 http://dx.doi.org/10.1038/s41598-020-77220-w Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Spooner, Annette
Chen, Emily
Sowmya, Arcot
Sachdev, Perminder
Kochan, Nicole A.
Trollor, Julian
Brodaty, Henry
A comparison of machine learning methods for survival analysis of high-dimensional clinical data for dementia prediction
title A comparison of machine learning methods for survival analysis of high-dimensional clinical data for dementia prediction
title_full A comparison of machine learning methods for survival analysis of high-dimensional clinical data for dementia prediction
title_fullStr A comparison of machine learning methods for survival analysis of high-dimensional clinical data for dementia prediction
title_full_unstemmed A comparison of machine learning methods for survival analysis of high-dimensional clinical data for dementia prediction
title_short A comparison of machine learning methods for survival analysis of high-dimensional clinical data for dementia prediction
title_sort comparison of machine learning methods for survival analysis of high-dimensional clinical data for dementia prediction
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7683682/
https://www.ncbi.nlm.nih.gov/pubmed/33230128
http://dx.doi.org/10.1038/s41598-020-77220-w
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