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Tracking and predicting the African COVID-19 pandemic

The ongoing coronavirus disease 2019 (COVID-19) pandemic is heterogeneous throughout Africa and threatening millions of lives. Surveillance and short-term modeling forecasts are critical to provide timely information for decisions on control strategies. We use a model that explains the evolution of...

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Autores principales: Ssentongo, Paddy, Fronterre, Claudio, Geronimo, Andrew, Greybush, Steven J., Mbabazi, Pamela K., Muvawala, Joseph, Nahalamba, Sarah B., Omadi, Philip O., Opar, Bernard T., Sinnar, Shamim A., Wang, Yan, Whalen, Andrew J., Held, Leonhard, Jewell, Chris, Muwanguzi, Abraham J. B., Greatrex, Helen, Norton, Michael M., Diggle, Peter, Schiff, Steven J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7685354/
https://www.ncbi.nlm.nih.gov/pubmed/33236036
http://dx.doi.org/10.1101/2020.11.13.20231241
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author Ssentongo, Paddy
Fronterre, Claudio
Geronimo, Andrew
Greybush, Steven J.
Mbabazi, Pamela K.
Muvawala, Joseph
Nahalamba, Sarah B.
Omadi, Philip O.
Opar, Bernard T.
Sinnar, Shamim A.
Wang, Yan
Whalen, Andrew J.
Held, Leonhard
Jewell, Chris
Muwanguzi, Abraham J. B.
Greatrex, Helen
Norton, Michael M.
Diggle, Peter
Schiff, Steven J.
author_facet Ssentongo, Paddy
Fronterre, Claudio
Geronimo, Andrew
Greybush, Steven J.
Mbabazi, Pamela K.
Muvawala, Joseph
Nahalamba, Sarah B.
Omadi, Philip O.
Opar, Bernard T.
Sinnar, Shamim A.
Wang, Yan
Whalen, Andrew J.
Held, Leonhard
Jewell, Chris
Muwanguzi, Abraham J. B.
Greatrex, Helen
Norton, Michael M.
Diggle, Peter
Schiff, Steven J.
author_sort Ssentongo, Paddy
collection PubMed
description The ongoing coronavirus disease 2019 (COVID-19) pandemic is heterogeneous throughout Africa and threatening millions of lives. Surveillance and short-term modeling forecasts are critical to provide timely information for decisions on control strategies. We use a model that explains the evolution of the COVID-19 pandemic over time in the entire African continent, parameterized by socioeconomic and geoeconomic variations and the lagged effects of social policy and meteorological history. We observed the effect of the human development index, containment policies, testing capacity, specific humidity, temperature and landlocked status of countries on the local within-country and external between-country transmission. One week forecasts of case numbers from the model were driven by the quality of the reported data. Seeking equitable behavioral and social interventions, balanced with coordinated country-specific strategies in infection suppression, should be a continental priority to control the COVID-19 pandemic in Africa.
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spelling pubmed-76853542020-11-25 Tracking and predicting the African COVID-19 pandemic Ssentongo, Paddy Fronterre, Claudio Geronimo, Andrew Greybush, Steven J. Mbabazi, Pamela K. Muvawala, Joseph Nahalamba, Sarah B. Omadi, Philip O. Opar, Bernard T. Sinnar, Shamim A. Wang, Yan Whalen, Andrew J. Held, Leonhard Jewell, Chris Muwanguzi, Abraham J. B. Greatrex, Helen Norton, Michael M. Diggle, Peter Schiff, Steven J. medRxiv Article The ongoing coronavirus disease 2019 (COVID-19) pandemic is heterogeneous throughout Africa and threatening millions of lives. Surveillance and short-term modeling forecasts are critical to provide timely information for decisions on control strategies. We use a model that explains the evolution of the COVID-19 pandemic over time in the entire African continent, parameterized by socioeconomic and geoeconomic variations and the lagged effects of social policy and meteorological history. We observed the effect of the human development index, containment policies, testing capacity, specific humidity, temperature and landlocked status of countries on the local within-country and external between-country transmission. One week forecasts of case numbers from the model were driven by the quality of the reported data. Seeking equitable behavioral and social interventions, balanced with coordinated country-specific strategies in infection suppression, should be a continental priority to control the COVID-19 pandemic in Africa. Cold Spring Harbor Laboratory 2020-11-16 /pmc/articles/PMC7685354/ /pubmed/33236036 http://dx.doi.org/10.1101/2020.11.13.20231241 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Ssentongo, Paddy
Fronterre, Claudio
Geronimo, Andrew
Greybush, Steven J.
Mbabazi, Pamela K.
Muvawala, Joseph
Nahalamba, Sarah B.
Omadi, Philip O.
Opar, Bernard T.
Sinnar, Shamim A.
Wang, Yan
Whalen, Andrew J.
Held, Leonhard
Jewell, Chris
Muwanguzi, Abraham J. B.
Greatrex, Helen
Norton, Michael M.
Diggle, Peter
Schiff, Steven J.
Tracking and predicting the African COVID-19 pandemic
title Tracking and predicting the African COVID-19 pandemic
title_full Tracking and predicting the African COVID-19 pandemic
title_fullStr Tracking and predicting the African COVID-19 pandemic
title_full_unstemmed Tracking and predicting the African COVID-19 pandemic
title_short Tracking and predicting the African COVID-19 pandemic
title_sort tracking and predicting the african covid-19 pandemic
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7685354/
https://www.ncbi.nlm.nih.gov/pubmed/33236036
http://dx.doi.org/10.1101/2020.11.13.20231241
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