Cargando…

A Novel Seventeen-Gene Metabolic Signature for Predicting Prognosis in Colon Cancer

A metabolic disorder is considered one of the hallmarks of cancer. Multiple differentially expressed metabolic genes have been identified in colon cancer (CC), and their biological functions and prognostic values have been well explored. The purpose of the present study was to establish a metabolic...

Descripción completa

Detalles Bibliográficos
Autores principales: Luo, Dakui, Shan, Zezhi, Liu, Qi, Cai, Sanjun, Li, Qingguo, Li, Xinxiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7685801/
https://www.ncbi.nlm.nih.gov/pubmed/33282950
http://dx.doi.org/10.1155/2020/4845360
_version_ 1783613239381196800
author Luo, Dakui
Shan, Zezhi
Liu, Qi
Cai, Sanjun
Li, Qingguo
Li, Xinxiang
author_facet Luo, Dakui
Shan, Zezhi
Liu, Qi
Cai, Sanjun
Li, Qingguo
Li, Xinxiang
author_sort Luo, Dakui
collection PubMed
description A metabolic disorder is considered one of the hallmarks of cancer. Multiple differentially expressed metabolic genes have been identified in colon cancer (CC), and their biological functions and prognostic values have been well explored. The purpose of the present study was to establish a metabolic signature to optimize the prognostic prediction in CC. The related data were downloaded from The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression (GTEx) database, and Gene Expression Omnibus (GEO) combined with GSE39582 set, GSE17538 set, GSE33113 set, and GSE37892 set. The differentially expressed metabolic genes were selected for univariate Cox regression and lasso Cox regression analysis using TCGA and GTEx datasets. Finally, a seventeen-gene metabolic signature was developed to divide patients into a high-risk group and a low-risk group. Patients in the high-risk group presented poorer prognosis compared to the low-risk group in both TCGA and GEO datasets. Moreover, gene set enrichment analyses demonstrated multiple significantly enriched metabolism-related pathways. To sum up, our study described a novel seventeen-gene metabolic signature for prognostic prediction of colon cancer.
format Online
Article
Text
id pubmed-7685801
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-76858012020-12-04 A Novel Seventeen-Gene Metabolic Signature for Predicting Prognosis in Colon Cancer Luo, Dakui Shan, Zezhi Liu, Qi Cai, Sanjun Li, Qingguo Li, Xinxiang Biomed Res Int Research Article A metabolic disorder is considered one of the hallmarks of cancer. Multiple differentially expressed metabolic genes have been identified in colon cancer (CC), and their biological functions and prognostic values have been well explored. The purpose of the present study was to establish a metabolic signature to optimize the prognostic prediction in CC. The related data were downloaded from The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression (GTEx) database, and Gene Expression Omnibus (GEO) combined with GSE39582 set, GSE17538 set, GSE33113 set, and GSE37892 set. The differentially expressed metabolic genes were selected for univariate Cox regression and lasso Cox regression analysis using TCGA and GTEx datasets. Finally, a seventeen-gene metabolic signature was developed to divide patients into a high-risk group and a low-risk group. Patients in the high-risk group presented poorer prognosis compared to the low-risk group in both TCGA and GEO datasets. Moreover, gene set enrichment analyses demonstrated multiple significantly enriched metabolism-related pathways. To sum up, our study described a novel seventeen-gene metabolic signature for prognostic prediction of colon cancer. Hindawi 2020-11-17 /pmc/articles/PMC7685801/ /pubmed/33282950 http://dx.doi.org/10.1155/2020/4845360 Text en Copyright © 2020 Dakui Luo et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Luo, Dakui
Shan, Zezhi
Liu, Qi
Cai, Sanjun
Li, Qingguo
Li, Xinxiang
A Novel Seventeen-Gene Metabolic Signature for Predicting Prognosis in Colon Cancer
title A Novel Seventeen-Gene Metabolic Signature for Predicting Prognosis in Colon Cancer
title_full A Novel Seventeen-Gene Metabolic Signature for Predicting Prognosis in Colon Cancer
title_fullStr A Novel Seventeen-Gene Metabolic Signature for Predicting Prognosis in Colon Cancer
title_full_unstemmed A Novel Seventeen-Gene Metabolic Signature for Predicting Prognosis in Colon Cancer
title_short A Novel Seventeen-Gene Metabolic Signature for Predicting Prognosis in Colon Cancer
title_sort novel seventeen-gene metabolic signature for predicting prognosis in colon cancer
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7685801/
https://www.ncbi.nlm.nih.gov/pubmed/33282950
http://dx.doi.org/10.1155/2020/4845360
work_keys_str_mv AT luodakui anovelseventeengenemetabolicsignatureforpredictingprognosisincoloncancer
AT shanzezhi anovelseventeengenemetabolicsignatureforpredictingprognosisincoloncancer
AT liuqi anovelseventeengenemetabolicsignatureforpredictingprognosisincoloncancer
AT caisanjun anovelseventeengenemetabolicsignatureforpredictingprognosisincoloncancer
AT liqingguo anovelseventeengenemetabolicsignatureforpredictingprognosisincoloncancer
AT lixinxiang anovelseventeengenemetabolicsignatureforpredictingprognosisincoloncancer
AT luodakui novelseventeengenemetabolicsignatureforpredictingprognosisincoloncancer
AT shanzezhi novelseventeengenemetabolicsignatureforpredictingprognosisincoloncancer
AT liuqi novelseventeengenemetabolicsignatureforpredictingprognosisincoloncancer
AT caisanjun novelseventeengenemetabolicsignatureforpredictingprognosisincoloncancer
AT liqingguo novelseventeengenemetabolicsignatureforpredictingprognosisincoloncancer
AT lixinxiang novelseventeengenemetabolicsignatureforpredictingprognosisincoloncancer