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Systematic Identification of Key Functional Modules and Genes in Gastric Cancer

Gastric cancer (GC) is associated with high incidence and mortality rates worldwide. Differentially expressed gene (DEG) analysis and weighted gene coexpression network analysis (WGCNA) are important bioinformatic methods for screening core genes. In our study, DEG analysis and WGCNA were combined t...

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Detalles Bibliográficos
Autores principales: Wu, Rui, Sun, Jin-Yu, Zhao, Li-Li, Fan, Zhi-Ning, Yang, Cheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7685902/
https://www.ncbi.nlm.nih.gov/pubmed/33282955
http://dx.doi.org/10.1155/2020/8853348
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author Wu, Rui
Sun, Jin-Yu
Zhao, Li-Li
Fan, Zhi-Ning
Yang, Cheng
author_facet Wu, Rui
Sun, Jin-Yu
Zhao, Li-Li
Fan, Zhi-Ning
Yang, Cheng
author_sort Wu, Rui
collection PubMed
description Gastric cancer (GC) is associated with high incidence and mortality rates worldwide. Differentially expressed gene (DEG) analysis and weighted gene coexpression network analysis (WGCNA) are important bioinformatic methods for screening core genes. In our study, DEG analysis and WGCNA were combined to screen the hub genes, and pathway enrichment analyses were performed on the DEGs. SBNO2 was identified as the hub gene based on the intersection between the DEGs and the purple module in WGCNA. The expression and prognostic value of SBNO2 were verified in UALCAN, GEPIA2, Human Cancer Metastasis Database, Kaplan–Meier plotter, and TIMER. We identified 1974 DEGs, and 28 modules were uncovered via WGCNA. The purple module was identified as the hub module in WGCNA. SBNO2 was identified as the hub gene, which was upregulated in tumour tissues. Moreover, patients with GC and higher SBNO2 expression had worse prognoses. In addition, SBNO2 was suggested to play an important role in immune cell infiltration. In summary, based on DEGs and key modules related to GC, we identified SBNO2 as a hub gene, thereby offering novel insights into the development and treatment of GC.
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spelling pubmed-76859022020-12-04 Systematic Identification of Key Functional Modules and Genes in Gastric Cancer Wu, Rui Sun, Jin-Yu Zhao, Li-Li Fan, Zhi-Ning Yang, Cheng Biomed Res Int Research Article Gastric cancer (GC) is associated with high incidence and mortality rates worldwide. Differentially expressed gene (DEG) analysis and weighted gene coexpression network analysis (WGCNA) are important bioinformatic methods for screening core genes. In our study, DEG analysis and WGCNA were combined to screen the hub genes, and pathway enrichment analyses were performed on the DEGs. SBNO2 was identified as the hub gene based on the intersection between the DEGs and the purple module in WGCNA. The expression and prognostic value of SBNO2 were verified in UALCAN, GEPIA2, Human Cancer Metastasis Database, Kaplan–Meier plotter, and TIMER. We identified 1974 DEGs, and 28 modules were uncovered via WGCNA. The purple module was identified as the hub module in WGCNA. SBNO2 was identified as the hub gene, which was upregulated in tumour tissues. Moreover, patients with GC and higher SBNO2 expression had worse prognoses. In addition, SBNO2 was suggested to play an important role in immune cell infiltration. In summary, based on DEGs and key modules related to GC, we identified SBNO2 as a hub gene, thereby offering novel insights into the development and treatment of GC. Hindawi 2020-11-16 /pmc/articles/PMC7685902/ /pubmed/33282955 http://dx.doi.org/10.1155/2020/8853348 Text en Copyright © 2020 Rui Wu et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Wu, Rui
Sun, Jin-Yu
Zhao, Li-Li
Fan, Zhi-Ning
Yang, Cheng
Systematic Identification of Key Functional Modules and Genes in Gastric Cancer
title Systematic Identification of Key Functional Modules and Genes in Gastric Cancer
title_full Systematic Identification of Key Functional Modules and Genes in Gastric Cancer
title_fullStr Systematic Identification of Key Functional Modules and Genes in Gastric Cancer
title_full_unstemmed Systematic Identification of Key Functional Modules and Genes in Gastric Cancer
title_short Systematic Identification of Key Functional Modules and Genes in Gastric Cancer
title_sort systematic identification of key functional modules and genes in gastric cancer
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7685902/
https://www.ncbi.nlm.nih.gov/pubmed/33282955
http://dx.doi.org/10.1155/2020/8853348
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