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A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase
N,N‐dimethyl formamide (DMF) is an extensively used organic solvent but is also a potent pollutant. Certain bacterial species from genera such as Paracoccus, Pseudomonas, and Alcaligenes have evolved to use DMF as a sole carbon and nitrogen source for growth via degradation by a dimethylformamidase...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7686228/ https://www.ncbi.nlm.nih.gov/pubmed/32452120 http://dx.doi.org/10.1002/anie.202005332 |
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author | Arya, Chetan Kumar Yadav, Swati Fine, Jonathan Casanal, Ana Chopra, Gaurav Ramanathan, Gurunath Vinothkumar, Kutti R. Subramanian, Ramaswamy |
author_facet | Arya, Chetan Kumar Yadav, Swati Fine, Jonathan Casanal, Ana Chopra, Gaurav Ramanathan, Gurunath Vinothkumar, Kutti R. Subramanian, Ramaswamy |
author_sort | Arya, Chetan Kumar |
collection | PubMed |
description | N,N‐dimethyl formamide (DMF) is an extensively used organic solvent but is also a potent pollutant. Certain bacterial species from genera such as Paracoccus, Pseudomonas, and Alcaligenes have evolved to use DMF as a sole carbon and nitrogen source for growth via degradation by a dimethylformamidase (DMFase). We show that DMFase from Paracoccus sp. strain DMF is a halophilic and thermostable enzyme comprising a multimeric complex of the α(2)β(2) or (α(2)β(2))(2) type. One of the three domains of the large subunit and the small subunit are hitherto undescribed protein folds of unknown evolutionary origin. The active site consists of a mononuclear iron coordinated by two Tyr side‐chain phenolates and one carboxylate from Glu. The Fe(3+) ion in the active site catalyzes the hydrolytic cleavage of the amide bond in DMF. Kinetic characterization reveals that the enzyme shows cooperativity between subunits, and mutagenesis and structural data provide clues to the catalytic mechanism. |
format | Online Article Text |
id | pubmed-7686228 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-76862282020-12-05 A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase Arya, Chetan Kumar Yadav, Swati Fine, Jonathan Casanal, Ana Chopra, Gaurav Ramanathan, Gurunath Vinothkumar, Kutti R. Subramanian, Ramaswamy Angew Chem Int Ed Engl Research Articles N,N‐dimethyl formamide (DMF) is an extensively used organic solvent but is also a potent pollutant. Certain bacterial species from genera such as Paracoccus, Pseudomonas, and Alcaligenes have evolved to use DMF as a sole carbon and nitrogen source for growth via degradation by a dimethylformamidase (DMFase). We show that DMFase from Paracoccus sp. strain DMF is a halophilic and thermostable enzyme comprising a multimeric complex of the α(2)β(2) or (α(2)β(2))(2) type. One of the three domains of the large subunit and the small subunit are hitherto undescribed protein folds of unknown evolutionary origin. The active site consists of a mononuclear iron coordinated by two Tyr side‐chain phenolates and one carboxylate from Glu. The Fe(3+) ion in the active site catalyzes the hydrolytic cleavage of the amide bond in DMF. Kinetic characterization reveals that the enzyme shows cooperativity between subunits, and mutagenesis and structural data provide clues to the catalytic mechanism. John Wiley and Sons Inc. 2020-06-30 2020-09-21 /pmc/articles/PMC7686228/ /pubmed/32452120 http://dx.doi.org/10.1002/anie.202005332 Text en © 2020 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Arya, Chetan Kumar Yadav, Swati Fine, Jonathan Casanal, Ana Chopra, Gaurav Ramanathan, Gurunath Vinothkumar, Kutti R. Subramanian, Ramaswamy A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase |
title | A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase |
title_full | A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase |
title_fullStr | A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase |
title_full_unstemmed | A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase |
title_short | A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase |
title_sort | 2‐tyr‐1‐carboxylate mononuclear iron center forms the active site of a paracoccus dimethylformamidase |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7686228/ https://www.ncbi.nlm.nih.gov/pubmed/32452120 http://dx.doi.org/10.1002/anie.202005332 |
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