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A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase

N,N‐dimethyl formamide (DMF) is an extensively used organic solvent but is also a potent pollutant. Certain bacterial species from genera such as Paracoccus, Pseudomonas, and Alcaligenes have evolved to use DMF as a sole carbon and nitrogen source for growth via degradation by a dimethylformamidase...

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Autores principales: Arya, Chetan Kumar, Yadav, Swati, Fine, Jonathan, Casanal, Ana, Chopra, Gaurav, Ramanathan, Gurunath, Vinothkumar, Kutti R., Subramanian, Ramaswamy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7686228/
https://www.ncbi.nlm.nih.gov/pubmed/32452120
http://dx.doi.org/10.1002/anie.202005332
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author Arya, Chetan Kumar
Yadav, Swati
Fine, Jonathan
Casanal, Ana
Chopra, Gaurav
Ramanathan, Gurunath
Vinothkumar, Kutti R.
Subramanian, Ramaswamy
author_facet Arya, Chetan Kumar
Yadav, Swati
Fine, Jonathan
Casanal, Ana
Chopra, Gaurav
Ramanathan, Gurunath
Vinothkumar, Kutti R.
Subramanian, Ramaswamy
author_sort Arya, Chetan Kumar
collection PubMed
description N,N‐dimethyl formamide (DMF) is an extensively used organic solvent but is also a potent pollutant. Certain bacterial species from genera such as Paracoccus, Pseudomonas, and Alcaligenes have evolved to use DMF as a sole carbon and nitrogen source for growth via degradation by a dimethylformamidase (DMFase). We show that DMFase from Paracoccus sp. strain DMF is a halophilic and thermostable enzyme comprising a multimeric complex of the α(2)β(2) or (α(2)β(2))(2) type. One of the three domains of the large subunit and the small subunit are hitherto undescribed protein folds of unknown evolutionary origin. The active site consists of a mononuclear iron coordinated by two Tyr side‐chain phenolates and one carboxylate from Glu. The Fe(3+) ion in the active site catalyzes the hydrolytic cleavage of the amide bond in DMF. Kinetic characterization reveals that the enzyme shows cooperativity between subunits, and mutagenesis and structural data provide clues to the catalytic mechanism.
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spelling pubmed-76862282020-12-05 A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase Arya, Chetan Kumar Yadav, Swati Fine, Jonathan Casanal, Ana Chopra, Gaurav Ramanathan, Gurunath Vinothkumar, Kutti R. Subramanian, Ramaswamy Angew Chem Int Ed Engl Research Articles N,N‐dimethyl formamide (DMF) is an extensively used organic solvent but is also a potent pollutant. Certain bacterial species from genera such as Paracoccus, Pseudomonas, and Alcaligenes have evolved to use DMF as a sole carbon and nitrogen source for growth via degradation by a dimethylformamidase (DMFase). We show that DMFase from Paracoccus sp. strain DMF is a halophilic and thermostable enzyme comprising a multimeric complex of the α(2)β(2) or (α(2)β(2))(2) type. One of the three domains of the large subunit and the small subunit are hitherto undescribed protein folds of unknown evolutionary origin. The active site consists of a mononuclear iron coordinated by two Tyr side‐chain phenolates and one carboxylate from Glu. The Fe(3+) ion in the active site catalyzes the hydrolytic cleavage of the amide bond in DMF. Kinetic characterization reveals that the enzyme shows cooperativity between subunits, and mutagenesis and structural data provide clues to the catalytic mechanism. John Wiley and Sons Inc. 2020-06-30 2020-09-21 /pmc/articles/PMC7686228/ /pubmed/32452120 http://dx.doi.org/10.1002/anie.202005332 Text en © 2020 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Arya, Chetan Kumar
Yadav, Swati
Fine, Jonathan
Casanal, Ana
Chopra, Gaurav
Ramanathan, Gurunath
Vinothkumar, Kutti R.
Subramanian, Ramaswamy
A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase
title A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase
title_full A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase
title_fullStr A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase
title_full_unstemmed A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase
title_short A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase
title_sort 2‐tyr‐1‐carboxylate mononuclear iron center forms the active site of a paracoccus dimethylformamidase
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7686228/
https://www.ncbi.nlm.nih.gov/pubmed/32452120
http://dx.doi.org/10.1002/anie.202005332
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