Cargando…
Toward Automated Free Energy Calculation with Accelerated Enveloping Distribution Sampling (A-EDS)
[Image: see text] Free-energy perturbation (FEP) methods are commonly used in drug design to calculate relative binding free energies of different ligands to a common host protein. Alchemical ligand transformations are usually performed in multiple steps which need to be chosen carefully to ensure s...
Autores principales: | Perthold, Jan Walther, Petrov, Dražen, Oostenbrink, Chris |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2020
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7686955/ https://www.ncbi.nlm.nih.gov/pubmed/32492343 http://dx.doi.org/10.1021/acs.jcim.0c00456 |
Ejemplares similares
-
Simulation of Reversible Protein–Protein Binding
and Calculation of Binding Free Energies Using Perturbed Distance
Restraints
por: Perthold, Jan Walther, et al.
Publicado: (2017) -
Accelerated Enveloping
Distribution Sampling (AEDS)
Allows for Efficient Sampling of Orthogonal Degrees of Freedom
por: Gracia Carmona, Oriol, et al.
Publicado: (2022) -
Accelerated Enveloping
Distribution Sampling to Probe
the Presence of Water Molecules
por: Gracia Carmona, Oriol, et al.
Publicado: (2023) -
Charge-Changing Perturbations and Path
Sampling via Classical Molecular Dynamic Simulations of Simple Guest–Host
Systems
por: Öhlknecht, Christoph, et al.
Publicado: (2020) -
Relative free-energy calculations for scaffold hopping-type transformations with an automated RE-EDS sampling procedure
por: Ries, Benjamin, et al.
Publicado: (2022)