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Bioinformatics identification of CCL8/21 as potential prognostic biomarkers in breast cancer microenvironment
Background: Breast cancer (BC) is the most common malignancy among females worldwide. The tumor microenvironment usually prevents effective lymphocyte activation and infiltration, and suppresses infiltrating effector cells, leading to a failure of the host to reject the tumor. CC chemokines play a s...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Portland Press Ltd.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687043/ https://www.ncbi.nlm.nih.gov/pubmed/33146700 http://dx.doi.org/10.1042/BSR20202042 |
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author | Chen, Bowen Zhang, Shuyuan Li, Qiuyu Wu, Shiting He, Han Huang, Jinbo |
author_facet | Chen, Bowen Zhang, Shuyuan Li, Qiuyu Wu, Shiting He, Han Huang, Jinbo |
author_sort | Chen, Bowen |
collection | PubMed |
description | Background: Breast cancer (BC) is the most common malignancy among females worldwide. The tumor microenvironment usually prevents effective lymphocyte activation and infiltration, and suppresses infiltrating effector cells, leading to a failure of the host to reject the tumor. CC chemokines play a significant role in inflammation and infection. Methods: In our study, we analyzed the expression and survival data of CC chemokines in patients with BC using several bioinformatics analyses tools. Results: The mRNA expression of CCL2/3/4/5/7/8/11/17/19/20/22 was remarkably increased while CCL14/21/23/28 was significantly down-regulated in BC tissues compared with normal tissues. Methylation could down-regulate expression of CCL2/5/15/17/19/20/22/23/24/25/26/27 in BC. Low expression of CCL3/4/23 was found to be associated with drug resistance in BC. Results from Kaplan–Meier plotter and BC Gene-Expression Miner v4.2 (bcGenExMiner) v4.2 demonstrated that BC patients with high CCL8 and low CCL19/21/22 expression were more likely to have a worse prognosis. CCL8 expression was significantly up-regulated in BC tissues compared with normal tissues. High CCL8 expression was significantly correlated with negative PR, negative ER, positive nodal status, triple-negative BC subtype, basal-like BC subtype, triple-negative and basal-like BC subtype and high grades. CCL21 was down-regulated in BC, while high levels of CCL21 was associated with negative PR, triple-negative subtype, basal-like subtype and low tumor grade. Functional analysis demonstrated that CCL8 and CCL21 were involved in carcinogenesis, tumor immune escape and chemoresistance in BC. Conclusion: Integrative bioinformatics analysis demonstrated CCL8/21 as potential prognostic biomarkers in BC microenvironment. |
format | Online Article Text |
id | pubmed-7687043 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Portland Press Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-76870432020-12-04 Bioinformatics identification of CCL8/21 as potential prognostic biomarkers in breast cancer microenvironment Chen, Bowen Zhang, Shuyuan Li, Qiuyu Wu, Shiting He, Han Huang, Jinbo Biosci Rep Bioinformatics Background: Breast cancer (BC) is the most common malignancy among females worldwide. The tumor microenvironment usually prevents effective lymphocyte activation and infiltration, and suppresses infiltrating effector cells, leading to a failure of the host to reject the tumor. CC chemokines play a significant role in inflammation and infection. Methods: In our study, we analyzed the expression and survival data of CC chemokines in patients with BC using several bioinformatics analyses tools. Results: The mRNA expression of CCL2/3/4/5/7/8/11/17/19/20/22 was remarkably increased while CCL14/21/23/28 was significantly down-regulated in BC tissues compared with normal tissues. Methylation could down-regulate expression of CCL2/5/15/17/19/20/22/23/24/25/26/27 in BC. Low expression of CCL3/4/23 was found to be associated with drug resistance in BC. Results from Kaplan–Meier plotter and BC Gene-Expression Miner v4.2 (bcGenExMiner) v4.2 demonstrated that BC patients with high CCL8 and low CCL19/21/22 expression were more likely to have a worse prognosis. CCL8 expression was significantly up-regulated in BC tissues compared with normal tissues. High CCL8 expression was significantly correlated with negative PR, negative ER, positive nodal status, triple-negative BC subtype, basal-like BC subtype, triple-negative and basal-like BC subtype and high grades. CCL21 was down-regulated in BC, while high levels of CCL21 was associated with negative PR, triple-negative subtype, basal-like subtype and low tumor grade. Functional analysis demonstrated that CCL8 and CCL21 were involved in carcinogenesis, tumor immune escape and chemoresistance in BC. Conclusion: Integrative bioinformatics analysis demonstrated CCL8/21 as potential prognostic biomarkers in BC microenvironment. Portland Press Ltd. 2020-11-24 /pmc/articles/PMC7687043/ /pubmed/33146700 http://dx.doi.org/10.1042/BSR20202042 Text en © 2020 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the . |
spellingShingle | Bioinformatics Chen, Bowen Zhang, Shuyuan Li, Qiuyu Wu, Shiting He, Han Huang, Jinbo Bioinformatics identification of CCL8/21 as potential prognostic biomarkers in breast cancer microenvironment |
title | Bioinformatics identification of CCL8/21 as potential prognostic biomarkers in breast cancer microenvironment |
title_full | Bioinformatics identification of CCL8/21 as potential prognostic biomarkers in breast cancer microenvironment |
title_fullStr | Bioinformatics identification of CCL8/21 as potential prognostic biomarkers in breast cancer microenvironment |
title_full_unstemmed | Bioinformatics identification of CCL8/21 as potential prognostic biomarkers in breast cancer microenvironment |
title_short | Bioinformatics identification of CCL8/21 as potential prognostic biomarkers in breast cancer microenvironment |
title_sort | bioinformatics identification of ccl8/21 as potential prognostic biomarkers in breast cancer microenvironment |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687043/ https://www.ncbi.nlm.nih.gov/pubmed/33146700 http://dx.doi.org/10.1042/BSR20202042 |
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