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Data libraries – the missing element for modeling biological systems

The primary bottleneck in understanding and modeling biological systems is shifting from data collection to data analysis and integration. This process critically depends on data being available in an organized form, so that they can be accessed, understood, and reused by a broad community of scient...

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Detalles Bibliográficos
Autor principal: Baryshnikova, Anastasia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687078/
https://www.ncbi.nlm.nih.gov/pubmed/32100391
http://dx.doi.org/10.1111/febs.15261
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author Baryshnikova, Anastasia
author_facet Baryshnikova, Anastasia
author_sort Baryshnikova, Anastasia
collection PubMed
description The primary bottleneck in understanding and modeling biological systems is shifting from data collection to data analysis and integration. This process critically depends on data being available in an organized form, so that they can be accessed, understood, and reused by a broad community of scientists. A proven solution for organizing data is literature curation, which extracts, aggregates, and distributes findings from publications. Here, I describe the benefits of extending curation practices to datasets, especially those that are not deposited in centralized databases. I argue that dataset curation (or ‘data librarianship’ as I suggest we call it) will overcome many barriers in data visibility and reusability and make a unique contribution to integration and modeling.
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spelling pubmed-76870782020-12-03 Data libraries – the missing element for modeling biological systems Baryshnikova, Anastasia FEBS J Viewpoint The primary bottleneck in understanding and modeling biological systems is shifting from data collection to data analysis and integration. This process critically depends on data being available in an organized form, so that they can be accessed, understood, and reused by a broad community of scientists. A proven solution for organizing data is literature curation, which extracts, aggregates, and distributes findings from publications. Here, I describe the benefits of extending curation practices to datasets, especially those that are not deposited in centralized databases. I argue that dataset curation (or ‘data librarianship’ as I suggest we call it) will overcome many barriers in data visibility and reusability and make a unique contribution to integration and modeling. John Wiley and Sons Inc. 2020-03-10 2020-11 /pmc/articles/PMC7687078/ /pubmed/32100391 http://dx.doi.org/10.1111/febs.15261 Text en © 2020 The Author. The FEBS Journal published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Viewpoint
Baryshnikova, Anastasia
Data libraries – the missing element for modeling biological systems
title Data libraries – the missing element for modeling biological systems
title_full Data libraries – the missing element for modeling biological systems
title_fullStr Data libraries – the missing element for modeling biological systems
title_full_unstemmed Data libraries – the missing element for modeling biological systems
title_short Data libraries – the missing element for modeling biological systems
title_sort data libraries – the missing element for modeling biological systems
topic Viewpoint
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687078/
https://www.ncbi.nlm.nih.gov/pubmed/32100391
http://dx.doi.org/10.1111/febs.15261
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