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Data libraries – the missing element for modeling biological systems
The primary bottleneck in understanding and modeling biological systems is shifting from data collection to data analysis and integration. This process critically depends on data being available in an organized form, so that they can be accessed, understood, and reused by a broad community of scient...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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John Wiley and Sons Inc.
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687078/ https://www.ncbi.nlm.nih.gov/pubmed/32100391 http://dx.doi.org/10.1111/febs.15261 |
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author | Baryshnikova, Anastasia |
author_facet | Baryshnikova, Anastasia |
author_sort | Baryshnikova, Anastasia |
collection | PubMed |
description | The primary bottleneck in understanding and modeling biological systems is shifting from data collection to data analysis and integration. This process critically depends on data being available in an organized form, so that they can be accessed, understood, and reused by a broad community of scientists. A proven solution for organizing data is literature curation, which extracts, aggregates, and distributes findings from publications. Here, I describe the benefits of extending curation practices to datasets, especially those that are not deposited in centralized databases. I argue that dataset curation (or ‘data librarianship’ as I suggest we call it) will overcome many barriers in data visibility and reusability and make a unique contribution to integration and modeling. |
format | Online Article Text |
id | pubmed-7687078 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-76870782020-12-03 Data libraries – the missing element for modeling biological systems Baryshnikova, Anastasia FEBS J Viewpoint The primary bottleneck in understanding and modeling biological systems is shifting from data collection to data analysis and integration. This process critically depends on data being available in an organized form, so that they can be accessed, understood, and reused by a broad community of scientists. A proven solution for organizing data is literature curation, which extracts, aggregates, and distributes findings from publications. Here, I describe the benefits of extending curation practices to datasets, especially those that are not deposited in centralized databases. I argue that dataset curation (or ‘data librarianship’ as I suggest we call it) will overcome many barriers in data visibility and reusability and make a unique contribution to integration and modeling. John Wiley and Sons Inc. 2020-03-10 2020-11 /pmc/articles/PMC7687078/ /pubmed/32100391 http://dx.doi.org/10.1111/febs.15261 Text en © 2020 The Author. The FEBS Journal published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Viewpoint Baryshnikova, Anastasia Data libraries – the missing element for modeling biological systems |
title | Data libraries – the missing element for modeling biological systems |
title_full | Data libraries – the missing element for modeling biological systems |
title_fullStr | Data libraries – the missing element for modeling biological systems |
title_full_unstemmed | Data libraries – the missing element for modeling biological systems |
title_short | Data libraries – the missing element for modeling biological systems |
title_sort | data libraries – the missing element for modeling biological systems |
topic | Viewpoint |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687078/ https://www.ncbi.nlm.nih.gov/pubmed/32100391 http://dx.doi.org/10.1111/febs.15261 |
work_keys_str_mv | AT baryshnikovaanastasia datalibrariesthemissingelementformodelingbiologicalsystems |