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The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae)
We presented complete chloroplast genome of Coffea arabica L. 'Typica' which is 155,187 bp long and has four subregions: 85,159 bp of large single copy (LSC) and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687381/ https://www.ncbi.nlm.nih.gov/pubmed/33365492 http://dx.doi.org/10.1080/23802359.2019.1624213 |
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author | Min, Juhyeon Kim, Yongsung Xi, Hong Heo, Kyeong-In Park, Jongsun |
author_facet | Min, Juhyeon Kim, Yongsung Xi, Hong Heo, Kyeong-In Park, Jongsun |
author_sort | Min, Juhyeon |
collection | PubMed |
description | We presented complete chloroplast genome of Coffea arabica L. 'Typica' which is 155,187 bp long and has four subregions: 85,159 bp of large single copy (LSC) and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding genes, eight rRNAs, and 37 tRNAs). The overall GC content of the chloroplast genome is 37.4% and those in the LSC, SSC, and IR regions are 35.4%, 31.3%, and 43.0%, respectively. Interestingly, almost most of sequence variations identified against five coffee chloroplast genomes are insertions and deletions. |
format | Online Article Text |
id | pubmed-7687381 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-76873812020-12-22 The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae) Min, Juhyeon Kim, Yongsung Xi, Hong Heo, Kyeong-In Park, Jongsun Mitochondrial DNA B Resour Mitogenome Announcement We presented complete chloroplast genome of Coffea arabica L. 'Typica' which is 155,187 bp long and has four subregions: 85,159 bp of large single copy (LSC) and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding genes, eight rRNAs, and 37 tRNAs). The overall GC content of the chloroplast genome is 37.4% and those in the LSC, SSC, and IR regions are 35.4%, 31.3%, and 43.0%, respectively. Interestingly, almost most of sequence variations identified against five coffee chloroplast genomes are insertions and deletions. Taylor & Francis 2019-07-11 /pmc/articles/PMC7687381/ /pubmed/33365492 http://dx.doi.org/10.1080/23802359.2019.1624213 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by-nc/4.0/ |
spellingShingle | Mitogenome Announcement Min, Juhyeon Kim, Yongsung Xi, Hong Heo, Kyeong-In Park, Jongsun The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae) |
title | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae) |
title_full | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae) |
title_fullStr | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae) |
title_full_unstemmed | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae) |
title_short | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae) |
title_sort | complete chloroplast genome of coffee tree, coffea arabica l. ‘typica’ (rubiaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687381/ https://www.ncbi.nlm.nih.gov/pubmed/33365492 http://dx.doi.org/10.1080/23802359.2019.1624213 |
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