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The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae)

We presented complete chloroplast genome of Coffea arabica L. 'Typica' which is 155,187 bp long and has four subregions: 85,159 bp of large single copy (LSC) and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86...

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Autores principales: Min, Juhyeon, Kim, Yongsung, Xi, Hong, Heo, Kyeong-In, Park, Jongsun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687381/
https://www.ncbi.nlm.nih.gov/pubmed/33365492
http://dx.doi.org/10.1080/23802359.2019.1624213
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author Min, Juhyeon
Kim, Yongsung
Xi, Hong
Heo, Kyeong-In
Park, Jongsun
author_facet Min, Juhyeon
Kim, Yongsung
Xi, Hong
Heo, Kyeong-In
Park, Jongsun
author_sort Min, Juhyeon
collection PubMed
description We presented complete chloroplast genome of Coffea arabica L. 'Typica' which is 155,187 bp long and has four subregions: 85,159 bp of large single copy (LSC) and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding genes, eight rRNAs, and 37 tRNAs). The overall GC content of the chloroplast genome is 37.4% and those in the LSC, SSC, and IR regions are 35.4%, 31.3%, and 43.0%, respectively. Interestingly, almost most of sequence variations identified against five coffee chloroplast genomes are insertions and deletions.
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spelling pubmed-76873812020-12-22 The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae) Min, Juhyeon Kim, Yongsung Xi, Hong Heo, Kyeong-In Park, Jongsun Mitochondrial DNA B Resour Mitogenome Announcement We presented complete chloroplast genome of Coffea arabica L. 'Typica' which is 155,187 bp long and has four subregions: 85,159 bp of large single copy (LSC) and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding genes, eight rRNAs, and 37 tRNAs). The overall GC content of the chloroplast genome is 37.4% and those in the LSC, SSC, and IR regions are 35.4%, 31.3%, and 43.0%, respectively. Interestingly, almost most of sequence variations identified against five coffee chloroplast genomes are insertions and deletions. Taylor & Francis 2019-07-11 /pmc/articles/PMC7687381/ /pubmed/33365492 http://dx.doi.org/10.1080/23802359.2019.1624213 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by-nc/4.0/
spellingShingle Mitogenome Announcement
Min, Juhyeon
Kim, Yongsung
Xi, Hong
Heo, Kyeong-In
Park, Jongsun
The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae)
title The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae)
title_full The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae)
title_fullStr The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae)
title_full_unstemmed The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae)
title_short The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae)
title_sort complete chloroplast genome of coffee tree, coffea arabica l. ‘typica’ (rubiaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687381/
https://www.ncbi.nlm.nih.gov/pubmed/33365492
http://dx.doi.org/10.1080/23802359.2019.1624213
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