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Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant

Callicarpa nudiflora Vahl is a medicinal plant occurring in Guangdong, Guangxi, Hainan provinces of China. Here, we report and characterize the complete plastid genome sequence of C. nudiflora in an effort to provide genomic resources useful for promoting its conservation. The complete plastome is 1...

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Autores principales: Wang, Hong-Xin, Chen, Lin, Cheng, Xia-Lan, Chen, Wen-Shu, Li, Lin-Ming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687407/
https://www.ncbi.nlm.nih.gov/pubmed/33365421
http://dx.doi.org/10.1080/23802359.2019.1613197
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author Wang, Hong-Xin
Chen, Lin
Cheng, Xia-Lan
Chen, Wen-Shu
Li, Lin-Ming
author_facet Wang, Hong-Xin
Chen, Lin
Cheng, Xia-Lan
Chen, Wen-Shu
Li, Lin-Ming
author_sort Wang, Hong-Xin
collection PubMed
description Callicarpa nudiflora Vahl is a medicinal plant occurring in Guangdong, Guangxi, Hainan provinces of China. Here, we report and characterize the complete plastid genome sequence of C. nudiflora in an effort to provide genomic resources useful for promoting its conservation. The complete plastome is 154,080 bp in length and contains the typical structure and gene content of angiosperm plastome, including two inverted repeat (IR) regions of 25,657 bp, a large single-copy (LSC) region of 84,949 bp, and a small single-copy (SSC) region of 17,817 bp. There are 113 genes annotated, including 79 unique protein-coding genes, 4 unique ribosomal RNA genes, and 30 transfer RNA genes. To investigate the evolution status of C. nudiflora, as well as Verbenaceae, we constructed a phylogenetic tree with C. nudiflora and other 11 species based on their complete chloroplast genomes. According to the phylogenetic topologies, C. nudiflora was closely related to Lancea hirstua.
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spelling pubmed-76874072020-12-22 Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant Wang, Hong-Xin Chen, Lin Cheng, Xia-Lan Chen, Wen-Shu Li, Lin-Ming Mitochondrial DNA B Resour Mitogenome Announcement Callicarpa nudiflora Vahl is a medicinal plant occurring in Guangdong, Guangxi, Hainan provinces of China. Here, we report and characterize the complete plastid genome sequence of C. nudiflora in an effort to provide genomic resources useful for promoting its conservation. The complete plastome is 154,080 bp in length and contains the typical structure and gene content of angiosperm plastome, including two inverted repeat (IR) regions of 25,657 bp, a large single-copy (LSC) region of 84,949 bp, and a small single-copy (SSC) region of 17,817 bp. There are 113 genes annotated, including 79 unique protein-coding genes, 4 unique ribosomal RNA genes, and 30 transfer RNA genes. To investigate the evolution status of C. nudiflora, as well as Verbenaceae, we constructed a phylogenetic tree with C. nudiflora and other 11 species based on their complete chloroplast genomes. According to the phylogenetic topologies, C. nudiflora was closely related to Lancea hirstua. Taylor & Francis 2019-07-10 /pmc/articles/PMC7687407/ /pubmed/33365421 http://dx.doi.org/10.1080/23802359.2019.1613197 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Wang, Hong-Xin
Chen, Lin
Cheng, Xia-Lan
Chen, Wen-Shu
Li, Lin-Ming
Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant
title Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant
title_full Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant
title_fullStr Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant
title_full_unstemmed Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant
title_short Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant
title_sort complete plastome sequence of callicarpa nudiflora vahl (verbenaceae): a medicinal plant
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687407/
https://www.ncbi.nlm.nih.gov/pubmed/33365421
http://dx.doi.org/10.1080/23802359.2019.1613197
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