Cargando…
Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant
Callicarpa nudiflora Vahl is a medicinal plant occurring in Guangdong, Guangxi, Hainan provinces of China. Here, we report and characterize the complete plastid genome sequence of C. nudiflora in an effort to provide genomic resources useful for promoting its conservation. The complete plastome is 1...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687407/ https://www.ncbi.nlm.nih.gov/pubmed/33365421 http://dx.doi.org/10.1080/23802359.2019.1613197 |
_version_ | 1783613511253884928 |
---|---|
author | Wang, Hong-Xin Chen, Lin Cheng, Xia-Lan Chen, Wen-Shu Li, Lin-Ming |
author_facet | Wang, Hong-Xin Chen, Lin Cheng, Xia-Lan Chen, Wen-Shu Li, Lin-Ming |
author_sort | Wang, Hong-Xin |
collection | PubMed |
description | Callicarpa nudiflora Vahl is a medicinal plant occurring in Guangdong, Guangxi, Hainan provinces of China. Here, we report and characterize the complete plastid genome sequence of C. nudiflora in an effort to provide genomic resources useful for promoting its conservation. The complete plastome is 154,080 bp in length and contains the typical structure and gene content of angiosperm plastome, including two inverted repeat (IR) regions of 25,657 bp, a large single-copy (LSC) region of 84,949 bp, and a small single-copy (SSC) region of 17,817 bp. There are 113 genes annotated, including 79 unique protein-coding genes, 4 unique ribosomal RNA genes, and 30 transfer RNA genes. To investigate the evolution status of C. nudiflora, as well as Verbenaceae, we constructed a phylogenetic tree with C. nudiflora and other 11 species based on their complete chloroplast genomes. According to the phylogenetic topologies, C. nudiflora was closely related to Lancea hirstua. |
format | Online Article Text |
id | pubmed-7687407 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-76874072020-12-22 Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant Wang, Hong-Xin Chen, Lin Cheng, Xia-Lan Chen, Wen-Shu Li, Lin-Ming Mitochondrial DNA B Resour Mitogenome Announcement Callicarpa nudiflora Vahl is a medicinal plant occurring in Guangdong, Guangxi, Hainan provinces of China. Here, we report and characterize the complete plastid genome sequence of C. nudiflora in an effort to provide genomic resources useful for promoting its conservation. The complete plastome is 154,080 bp in length and contains the typical structure and gene content of angiosperm plastome, including two inverted repeat (IR) regions of 25,657 bp, a large single-copy (LSC) region of 84,949 bp, and a small single-copy (SSC) region of 17,817 bp. There are 113 genes annotated, including 79 unique protein-coding genes, 4 unique ribosomal RNA genes, and 30 transfer RNA genes. To investigate the evolution status of C. nudiflora, as well as Verbenaceae, we constructed a phylogenetic tree with C. nudiflora and other 11 species based on their complete chloroplast genomes. According to the phylogenetic topologies, C. nudiflora was closely related to Lancea hirstua. Taylor & Francis 2019-07-10 /pmc/articles/PMC7687407/ /pubmed/33365421 http://dx.doi.org/10.1080/23802359.2019.1613197 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Wang, Hong-Xin Chen, Lin Cheng, Xia-Lan Chen, Wen-Shu Li, Lin-Ming Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant |
title | Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant |
title_full | Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant |
title_fullStr | Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant |
title_full_unstemmed | Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant |
title_short | Complete plastome sequence of Callicarpa nudiflora Vahl (Verbenaceae): a medicinal plant |
title_sort | complete plastome sequence of callicarpa nudiflora vahl (verbenaceae): a medicinal plant |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687407/ https://www.ncbi.nlm.nih.gov/pubmed/33365421 http://dx.doi.org/10.1080/23802359.2019.1613197 |
work_keys_str_mv | AT wanghongxin completeplastomesequenceofcallicarpanudifloravahlverbenaceaeamedicinalplant AT chenlin completeplastomesequenceofcallicarpanudifloravahlverbenaceaeamedicinalplant AT chengxialan completeplastomesequenceofcallicarpanudifloravahlverbenaceaeamedicinalplant AT chenwenshu completeplastomesequenceofcallicarpanudifloravahlverbenaceaeamedicinalplant AT lilinming completeplastomesequenceofcallicarpanudifloravahlverbenaceaeamedicinalplant |