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The complete chloroplast genome of a Chinese endemic ornamental plant Sorbus unguiculata Koehne (Rosaceae)

Sorbus unguiculata is a pinnate-leaved deciduous shrub growing in mixed forests in Sichuan province, China. It is one of the least known species in the genus with high ornamental value. In this study, we firstly assembled and annotated the complete chloroplast genome of the species using the next-ge...

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Autores principales: Niu, Zhengyang, Xiong, Zhongren, Xi, Lianlian, Chen, Xin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687415/
https://www.ncbi.nlm.nih.gov/pubmed/33365486
http://dx.doi.org/10.1080/23802359.2019.1624632
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author Niu, Zhengyang
Xiong, Zhongren
Xi, Lianlian
Chen, Xin
author_facet Niu, Zhengyang
Xiong, Zhongren
Xi, Lianlian
Chen, Xin
author_sort Niu, Zhengyang
collection PubMed
description Sorbus unguiculata is a pinnate-leaved deciduous shrub growing in mixed forests in Sichuan province, China. It is one of the least known species in the genus with high ornamental value. In this study, we firstly assembled and annotated the complete chloroplast genome of the species using the next-generation sequencing method. The results showed that the chloroplast genome size is 159,900 bp, comprising of a large single-copy (LSC) region of 87,888 bp, a small single-copy (SSC) region of 19,256 bp, and a pair of IR regions of 26,378 bp. The whole cp genome predicted 109 genes in total, including 76 protein-coding genes, 29 tRNAs, and 4 tRNAs. The overall GC content of the chloroplast genome is 36.6%. The phylogenetic relationship exhibited that S. unguiculata is closely clustered with S. helenae in Sorbus.
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spelling pubmed-76874152020-12-22 The complete chloroplast genome of a Chinese endemic ornamental plant Sorbus unguiculata Koehne (Rosaceae) Niu, Zhengyang Xiong, Zhongren Xi, Lianlian Chen, Xin Mitochondrial DNA B Resour Mitogenome Announcement Sorbus unguiculata is a pinnate-leaved deciduous shrub growing in mixed forests in Sichuan province, China. It is one of the least known species in the genus with high ornamental value. In this study, we firstly assembled and annotated the complete chloroplast genome of the species using the next-generation sequencing method. The results showed that the chloroplast genome size is 159,900 bp, comprising of a large single-copy (LSC) region of 87,888 bp, a small single-copy (SSC) region of 19,256 bp, and a pair of IR regions of 26,378 bp. The whole cp genome predicted 109 genes in total, including 76 protein-coding genes, 29 tRNAs, and 4 tRNAs. The overall GC content of the chloroplast genome is 36.6%. The phylogenetic relationship exhibited that S. unguiculata is closely clustered with S. helenae in Sorbus. Taylor & Francis 2019-07-11 /pmc/articles/PMC7687415/ /pubmed/33365486 http://dx.doi.org/10.1080/23802359.2019.1624632 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Niu, Zhengyang
Xiong, Zhongren
Xi, Lianlian
Chen, Xin
The complete chloroplast genome of a Chinese endemic ornamental plant Sorbus unguiculata Koehne (Rosaceae)
title The complete chloroplast genome of a Chinese endemic ornamental plant Sorbus unguiculata Koehne (Rosaceae)
title_full The complete chloroplast genome of a Chinese endemic ornamental plant Sorbus unguiculata Koehne (Rosaceae)
title_fullStr The complete chloroplast genome of a Chinese endemic ornamental plant Sorbus unguiculata Koehne (Rosaceae)
title_full_unstemmed The complete chloroplast genome of a Chinese endemic ornamental plant Sorbus unguiculata Koehne (Rosaceae)
title_short The complete chloroplast genome of a Chinese endemic ornamental plant Sorbus unguiculata Koehne (Rosaceae)
title_sort complete chloroplast genome of a chinese endemic ornamental plant sorbus unguiculata koehne (rosaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687415/
https://www.ncbi.nlm.nih.gov/pubmed/33365486
http://dx.doi.org/10.1080/23802359.2019.1624632
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