Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885)

In this study, we first assembled and characterized the complete chloroplast genome of red seaweed Halymenia maculata. It is 190,431 bp in length, with an AT content of 70.56%. In total, 122 genes were identified, and they consisted of 87 protein-coding genes, 33 tRNA genes, and two rRNA genes. The...

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Autores principales: Tan, Wei, Wang, Rongxia, Liu, Hongtao, Wang, Yongbo, Ke, Hongji, Fan, Jiawei, Chen, Fuxiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687420/
https://www.ncbi.nlm.nih.gov/pubmed/33365501
http://dx.doi.org/10.1080/23802359.2019.1624649
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author Tan, Wei
Wang, Rongxia
Liu, Hongtao
Wang, Yongbo
Ke, Hongji
Fan, Jiawei
Chen, Fuxiao
author_facet Tan, Wei
Wang, Rongxia
Liu, Hongtao
Wang, Yongbo
Ke, Hongji
Fan, Jiawei
Chen, Fuxiao
author_sort Tan, Wei
collection PubMed
description In this study, we first assembled and characterized the complete chloroplast genome of red seaweed Halymenia maculata. It is 190,431 bp in length, with an AT content of 70.56%. In total, 122 genes were identified, and they consisted of 87 protein-coding genes, 33 tRNA genes, and two rRNA genes. The chloroplast genome of H. maculata did not show an obvious quadripartite structure. A total of five microsatellites (SSRs) were identified in the genome using MISA. Phylogenetic analysis revealed that H. maculata was first clustered with Grateloupia filicina and Grateloupia taiwanensis in a monophyletic clade that provides useful data for the phylogeny and taxonomy of Rhodymeniophycidae.
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spelling pubmed-76874202020-12-22 Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885) Tan, Wei Wang, Rongxia Liu, Hongtao Wang, Yongbo Ke, Hongji Fan, Jiawei Chen, Fuxiao Mitochondrial DNA B Resour Mitogenome Announcement In this study, we first assembled and characterized the complete chloroplast genome of red seaweed Halymenia maculata. It is 190,431 bp in length, with an AT content of 70.56%. In total, 122 genes were identified, and they consisted of 87 protein-coding genes, 33 tRNA genes, and two rRNA genes. The chloroplast genome of H. maculata did not show an obvious quadripartite structure. A total of five microsatellites (SSRs) were identified in the genome using MISA. Phylogenetic analysis revealed that H. maculata was first clustered with Grateloupia filicina and Grateloupia taiwanensis in a monophyletic clade that provides useful data for the phylogeny and taxonomy of Rhodymeniophycidae. Taylor & Francis 2019-07-11 /pmc/articles/PMC7687420/ /pubmed/33365501 http://dx.doi.org/10.1080/23802359.2019.1624649 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Tan, Wei
Wang, Rongxia
Liu, Hongtao
Wang, Yongbo
Ke, Hongji
Fan, Jiawei
Chen, Fuxiao
Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885)
title Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885)
title_full Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885)
title_fullStr Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885)
title_full_unstemmed Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885)
title_short Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885)
title_sort complete chloroplast genome of red seaweed halymenia maculata (j. agardh, 1885)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687420/
https://www.ncbi.nlm.nih.gov/pubmed/33365501
http://dx.doi.org/10.1080/23802359.2019.1624649
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