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Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758)

The complete mitochondrial genome of Trachycardium flavum from South China Sea was first determined in this study, which is 16,596 bp in length. The base composition of the mitogenome is a less biased (A, G, T, and C was 21.5%, 26.3%, 37.0%, and 15.2%, respectively) with A + T contents of 58%. It co...

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Autores principales: Pu, Liyun, Liu, Hongtao, Yang, Mingqiu, Wang, Guofu, Xia, Guangyuan, Shen, Minghui, Li, Bingshun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687493/
https://www.ncbi.nlm.nih.gov/pubmed/33365489
http://dx.doi.org/10.1080/23802359.2019.1624211
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author Pu, Liyun
Liu, Hongtao
Yang, Mingqiu
Wang, Guofu
Xia, Guangyuan
Shen, Minghui
Li, Bingshun
author_facet Pu, Liyun
Liu, Hongtao
Yang, Mingqiu
Wang, Guofu
Xia, Guangyuan
Shen, Minghui
Li, Bingshun
author_sort Pu, Liyun
collection PubMed
description The complete mitochondrial genome of Trachycardium flavum from South China Sea was first determined in this study, which is 16,596 bp in length. The base composition of the mitogenome is a less biased (A, G, T, and C was 21.5%, 26.3%, 37.0%, and 15.2%, respectively) with A + T contents of 58%. It consists of 24 tRNA genes, two rRNA genes, and 12 protein-coding genes (PCGs). No typical control region was found in non-coding sequence. Interestingly, ATP8 genes was absence same as most shellfish. Nine PCGs use a special start codon TTG, and the other three genes use a normal initiation codon ATN. Except ND6 use a single base G as the stop codon, the others all end with the normal stop codon TAG. The phylogenetic tree showed that T. flavum was first clustered with Fulvia mutica, Cerastoderma edule, and Acanthocardia tuberculate, which all belong to Cardiidae.
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spelling pubmed-76874932020-12-22 Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758) Pu, Liyun Liu, Hongtao Yang, Mingqiu Wang, Guofu Xia, Guangyuan Shen, Minghui Li, Bingshun Mitochondrial DNA B Resour Mitogenome Announcement The complete mitochondrial genome of Trachycardium flavum from South China Sea was first determined in this study, which is 16,596 bp in length. The base composition of the mitogenome is a less biased (A, G, T, and C was 21.5%, 26.3%, 37.0%, and 15.2%, respectively) with A + T contents of 58%. It consists of 24 tRNA genes, two rRNA genes, and 12 protein-coding genes (PCGs). No typical control region was found in non-coding sequence. Interestingly, ATP8 genes was absence same as most shellfish. Nine PCGs use a special start codon TTG, and the other three genes use a normal initiation codon ATN. Except ND6 use a single base G as the stop codon, the others all end with the normal stop codon TAG. The phylogenetic tree showed that T. flavum was first clustered with Fulvia mutica, Cerastoderma edule, and Acanthocardia tuberculate, which all belong to Cardiidae. Taylor & Francis 2019-07-11 /pmc/articles/PMC7687493/ /pubmed/33365489 http://dx.doi.org/10.1080/23802359.2019.1624211 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Pu, Liyun
Liu, Hongtao
Yang, Mingqiu
Wang, Guofu
Xia, Guangyuan
Shen, Minghui
Li, Bingshun
Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758)
title Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758)
title_full Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758)
title_fullStr Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758)
title_full_unstemmed Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758)
title_short Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758)
title_sort complete mitochondrial genome of trachycardium flavum (linnaeus, 1758)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687493/
https://www.ncbi.nlm.nih.gov/pubmed/33365489
http://dx.doi.org/10.1080/23802359.2019.1624211
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