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Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758)
The complete mitochondrial genome of Trachycardium flavum from South China Sea was first determined in this study, which is 16,596 bp in length. The base composition of the mitogenome is a less biased (A, G, T, and C was 21.5%, 26.3%, 37.0%, and 15.2%, respectively) with A + T contents of 58%. It co...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687493/ https://www.ncbi.nlm.nih.gov/pubmed/33365489 http://dx.doi.org/10.1080/23802359.2019.1624211 |
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author | Pu, Liyun Liu, Hongtao Yang, Mingqiu Wang, Guofu Xia, Guangyuan Shen, Minghui Li, Bingshun |
author_facet | Pu, Liyun Liu, Hongtao Yang, Mingqiu Wang, Guofu Xia, Guangyuan Shen, Minghui Li, Bingshun |
author_sort | Pu, Liyun |
collection | PubMed |
description | The complete mitochondrial genome of Trachycardium flavum from South China Sea was first determined in this study, which is 16,596 bp in length. The base composition of the mitogenome is a less biased (A, G, T, and C was 21.5%, 26.3%, 37.0%, and 15.2%, respectively) with A + T contents of 58%. It consists of 24 tRNA genes, two rRNA genes, and 12 protein-coding genes (PCGs). No typical control region was found in non-coding sequence. Interestingly, ATP8 genes was absence same as most shellfish. Nine PCGs use a special start codon TTG, and the other three genes use a normal initiation codon ATN. Except ND6 use a single base G as the stop codon, the others all end with the normal stop codon TAG. The phylogenetic tree showed that T. flavum was first clustered with Fulvia mutica, Cerastoderma edule, and Acanthocardia tuberculate, which all belong to Cardiidae. |
format | Online Article Text |
id | pubmed-7687493 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-76874932020-12-22 Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758) Pu, Liyun Liu, Hongtao Yang, Mingqiu Wang, Guofu Xia, Guangyuan Shen, Minghui Li, Bingshun Mitochondrial DNA B Resour Mitogenome Announcement The complete mitochondrial genome of Trachycardium flavum from South China Sea was first determined in this study, which is 16,596 bp in length. The base composition of the mitogenome is a less biased (A, G, T, and C was 21.5%, 26.3%, 37.0%, and 15.2%, respectively) with A + T contents of 58%. It consists of 24 tRNA genes, two rRNA genes, and 12 protein-coding genes (PCGs). No typical control region was found in non-coding sequence. Interestingly, ATP8 genes was absence same as most shellfish. Nine PCGs use a special start codon TTG, and the other three genes use a normal initiation codon ATN. Except ND6 use a single base G as the stop codon, the others all end with the normal stop codon TAG. The phylogenetic tree showed that T. flavum was first clustered with Fulvia mutica, Cerastoderma edule, and Acanthocardia tuberculate, which all belong to Cardiidae. Taylor & Francis 2019-07-11 /pmc/articles/PMC7687493/ /pubmed/33365489 http://dx.doi.org/10.1080/23802359.2019.1624211 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Pu, Liyun Liu, Hongtao Yang, Mingqiu Wang, Guofu Xia, Guangyuan Shen, Minghui Li, Bingshun Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758) |
title | Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758) |
title_full | Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758) |
title_fullStr | Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758) |
title_full_unstemmed | Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758) |
title_short | Complete mitochondrial genome of Trachycardium flavum (Linnaeus, 1758) |
title_sort | complete mitochondrial genome of trachycardium flavum (linnaeus, 1758) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687493/ https://www.ncbi.nlm.nih.gov/pubmed/33365489 http://dx.doi.org/10.1080/23802359.2019.1624211 |
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