The first complete chloroplast genome sequence of Lanxangia tsaoko and phylogenetic analysis

Lanxangia tsaoko is a famous Chinese traditional medicine with long history. In this study, the complete chloroplast (cp) genome of L. tsaoko was characterized and assembled using a high-throughput sequencing method. The complete cp genome is 164,008 bp in length, including a large single copy (LSC)...

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Autores principales: Meng, Jing, Jiang, Hui, He, Jun, He, Yonghong, Zhang, Yuwen, Zhao, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687529/
https://www.ncbi.nlm.nih.gov/pubmed/33365524
http://dx.doi.org/10.1080/23802359.2019.1629354
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author Meng, Jing
Jiang, Hui
He, Jun
He, Yonghong
Zhang, Yuwen
Zhao, Yan
author_facet Meng, Jing
Jiang, Hui
He, Jun
He, Yonghong
Zhang, Yuwen
Zhao, Yan
author_sort Meng, Jing
collection PubMed
description Lanxangia tsaoko is a famous Chinese traditional medicine with long history. In this study, the complete chloroplast (cp) genome of L. tsaoko was characterized and assembled using a high-throughput sequencing method. The complete cp genome is 164,008 bp in length, including a large single copy (LSC) region of 89,134 bp and a small single copy (SSC) region of 15,372 bp separated by two inverted repeat (IR) regions of 29,751 bp. A total of 137 genes were identified, including 88 protein-coding genes (PCG), 38 transfer RNA genes, 8 ribosomal RNA genes, and 3 pseudogenes. The phylogenetic analysis revealed that L. tsaoko is located in Zingiberaceace, closely related to Amomum and Alpinia with a 100% bootstrap support.
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spelling pubmed-76875292020-12-22 The first complete chloroplast genome sequence of Lanxangia tsaoko and phylogenetic analysis Meng, Jing Jiang, Hui He, Jun He, Yonghong Zhang, Yuwen Zhao, Yan Mitochondrial DNA B Resour Mitogenome Announcement Lanxangia tsaoko is a famous Chinese traditional medicine with long history. In this study, the complete chloroplast (cp) genome of L. tsaoko was characterized and assembled using a high-throughput sequencing method. The complete cp genome is 164,008 bp in length, including a large single copy (LSC) region of 89,134 bp and a small single copy (SSC) region of 15,372 bp separated by two inverted repeat (IR) regions of 29,751 bp. A total of 137 genes were identified, including 88 protein-coding genes (PCG), 38 transfer RNA genes, 8 ribosomal RNA genes, and 3 pseudogenes. The phylogenetic analysis revealed that L. tsaoko is located in Zingiberaceace, closely related to Amomum and Alpinia with a 100% bootstrap support. Taylor & Francis 2019-07-11 /pmc/articles/PMC7687529/ /pubmed/33365524 http://dx.doi.org/10.1080/23802359.2019.1629354 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Meng, Jing
Jiang, Hui
He, Jun
He, Yonghong
Zhang, Yuwen
Zhao, Yan
The first complete chloroplast genome sequence of Lanxangia tsaoko and phylogenetic analysis
title The first complete chloroplast genome sequence of Lanxangia tsaoko and phylogenetic analysis
title_full The first complete chloroplast genome sequence of Lanxangia tsaoko and phylogenetic analysis
title_fullStr The first complete chloroplast genome sequence of Lanxangia tsaoko and phylogenetic analysis
title_full_unstemmed The first complete chloroplast genome sequence of Lanxangia tsaoko and phylogenetic analysis
title_short The first complete chloroplast genome sequence of Lanxangia tsaoko and phylogenetic analysis
title_sort first complete chloroplast genome sequence of lanxangia tsaoko and phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687529/
https://www.ncbi.nlm.nih.gov/pubmed/33365524
http://dx.doi.org/10.1080/23802359.2019.1629354
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