The complete chloroplast genome of Aucuba obcordata (Rehder) Fu ex W. K. Hu et Soong (Garryaceae) from China

Aucuba obcordata is an endemic species and traditional Chinese medicine in China. The complete chloroplast genome sequence of A. obcordata was generated by de novo assembly using whole genome next generation sequencing. The complete chloroplast genome was 157,993 bp in length, contained four parts:...

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Detalles Bibliográficos
Autores principales: Lian, Jiating, Tong, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687530/
https://www.ncbi.nlm.nih.gov/pubmed/33365587
http://dx.doi.org/10.1080/23802359.2019.1638843
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author Lian, Jiating
Tong, Yi
author_facet Lian, Jiating
Tong, Yi
author_sort Lian, Jiating
collection PubMed
description Aucuba obcordata is an endemic species and traditional Chinese medicine in China. The complete chloroplast genome sequence of A. obcordata was generated by de novo assembly using whole genome next generation sequencing. The complete chloroplast genome was 157,993 bp in length, contained four parts: a large single copy (LSC) region of 87317 bp, a small single copy (SSC) region of 18483 bp, and two inverted repeat (IRs) regions of 26,094 bp each. The genome annotation contained a total of 113 genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The overall GC content was 37.8%. Phylogenetic analysis of chloroplast genomes clustered A. obcordata with Eucommia ulmoides Oliver.
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spelling pubmed-76875302020-12-22 The complete chloroplast genome of Aucuba obcordata (Rehder) Fu ex W. K. Hu et Soong (Garryaceae) from China Lian, Jiating Tong, Yi Mitochondrial DNA B Resour Mitogenome Announcement Aucuba obcordata is an endemic species and traditional Chinese medicine in China. The complete chloroplast genome sequence of A. obcordata was generated by de novo assembly using whole genome next generation sequencing. The complete chloroplast genome was 157,993 bp in length, contained four parts: a large single copy (LSC) region of 87317 bp, a small single copy (SSC) region of 18483 bp, and two inverted repeat (IRs) regions of 26,094 bp each. The genome annotation contained a total of 113 genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The overall GC content was 37.8%. Phylogenetic analysis of chloroplast genomes clustered A. obcordata with Eucommia ulmoides Oliver. Taylor & Francis 2019-07-13 /pmc/articles/PMC7687530/ /pubmed/33365587 http://dx.doi.org/10.1080/23802359.2019.1638843 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by-nc/4.0/
spellingShingle Mitogenome Announcement
Lian, Jiating
Tong, Yi
The complete chloroplast genome of Aucuba obcordata (Rehder) Fu ex W. K. Hu et Soong (Garryaceae) from China
title The complete chloroplast genome of Aucuba obcordata (Rehder) Fu ex W. K. Hu et Soong (Garryaceae) from China
title_full The complete chloroplast genome of Aucuba obcordata (Rehder) Fu ex W. K. Hu et Soong (Garryaceae) from China
title_fullStr The complete chloroplast genome of Aucuba obcordata (Rehder) Fu ex W. K. Hu et Soong (Garryaceae) from China
title_full_unstemmed The complete chloroplast genome of Aucuba obcordata (Rehder) Fu ex W. K. Hu et Soong (Garryaceae) from China
title_short The complete chloroplast genome of Aucuba obcordata (Rehder) Fu ex W. K. Hu et Soong (Garryaceae) from China
title_sort complete chloroplast genome of aucuba obcordata (rehder) fu ex w. k. hu et soong (garryaceae) from china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687530/
https://www.ncbi.nlm.nih.gov/pubmed/33365587
http://dx.doi.org/10.1080/23802359.2019.1638843
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