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Complete plastome sequence of Ilex asprella (Hooker and Arnott) Champion ex Bentham (Aquifoliaceae), a Chinese folk herbal medicine

The complete chloroplast genome of Ilex asprella, a species of Aquifoliaceae is reported for the first time in this study. The complete chloroplast genome of I. asprella is 157,856 bp in length with a typical quadripartite structure, consisting of a large single-copy region (LSC, 87,258 bp), a singl...

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Autores principales: Chen, Yan, Chen, Hua-Xu, Li, Hai-Li, Cheng, Xia-Lan, Wang, Li-Yun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687541/
https://www.ncbi.nlm.nih.gov/pubmed/33365534
http://dx.doi.org/10.1080/23802359.2019.1629347
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author Chen, Yan
Chen, Hua-Xu
Li, Hai-Li
Cheng, Xia-Lan
Wang, Li-Yun
author_facet Chen, Yan
Chen, Hua-Xu
Li, Hai-Li
Cheng, Xia-Lan
Wang, Li-Yun
author_sort Chen, Yan
collection PubMed
description The complete chloroplast genome of Ilex asprella, a species of Aquifoliaceae is reported for the first time in this study. The complete chloroplast genome of I. asprella is 157,856 bp in length with a typical quadripartite structure, consisting of a large single-copy region (LSC, 87,258 bp), a single-copy region (SSC, 18,441 bp) and a pair of inverted repeats (IRs, 26,082 bp). There are 114 genes annotated, including 85 unique protein-coding genes, four unique ribosomal RNA genes, and 30 transfer RNA genes. To investigate the evolution status of T. concolor, as well as Scrophulariaceae, we build a phylogenetic tree with I. asprella and other eight species based on their complete chloroplast genomes. According to the phylogenetic topologies, I. asprella was closely related to I. wilsonii.
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spelling pubmed-76875412020-12-22 Complete plastome sequence of Ilex asprella (Hooker and Arnott) Champion ex Bentham (Aquifoliaceae), a Chinese folk herbal medicine Chen, Yan Chen, Hua-Xu Li, Hai-Li Cheng, Xia-Lan Wang, Li-Yun Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome of Ilex asprella, a species of Aquifoliaceae is reported for the first time in this study. The complete chloroplast genome of I. asprella is 157,856 bp in length with a typical quadripartite structure, consisting of a large single-copy region (LSC, 87,258 bp), a single-copy region (SSC, 18,441 bp) and a pair of inverted repeats (IRs, 26,082 bp). There are 114 genes annotated, including 85 unique protein-coding genes, four unique ribosomal RNA genes, and 30 transfer RNA genes. To investigate the evolution status of T. concolor, as well as Scrophulariaceae, we build a phylogenetic tree with I. asprella and other eight species based on their complete chloroplast genomes. According to the phylogenetic topologies, I. asprella was closely related to I. wilsonii. Taylor & Francis 2019-07-12 /pmc/articles/PMC7687541/ /pubmed/33365534 http://dx.doi.org/10.1080/23802359.2019.1629347 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Chen, Yan
Chen, Hua-Xu
Li, Hai-Li
Cheng, Xia-Lan
Wang, Li-Yun
Complete plastome sequence of Ilex asprella (Hooker and Arnott) Champion ex Bentham (Aquifoliaceae), a Chinese folk herbal medicine
title Complete plastome sequence of Ilex asprella (Hooker and Arnott) Champion ex Bentham (Aquifoliaceae), a Chinese folk herbal medicine
title_full Complete plastome sequence of Ilex asprella (Hooker and Arnott) Champion ex Bentham (Aquifoliaceae), a Chinese folk herbal medicine
title_fullStr Complete plastome sequence of Ilex asprella (Hooker and Arnott) Champion ex Bentham (Aquifoliaceae), a Chinese folk herbal medicine
title_full_unstemmed Complete plastome sequence of Ilex asprella (Hooker and Arnott) Champion ex Bentham (Aquifoliaceae), a Chinese folk herbal medicine
title_short Complete plastome sequence of Ilex asprella (Hooker and Arnott) Champion ex Bentham (Aquifoliaceae), a Chinese folk herbal medicine
title_sort complete plastome sequence of ilex asprella (hooker and arnott) champion ex bentham (aquifoliaceae), a chinese folk herbal medicine
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687541/
https://www.ncbi.nlm.nih.gov/pubmed/33365534
http://dx.doi.org/10.1080/23802359.2019.1629347
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