The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae)

We presented complete chloroplast genome of Coffea arabica BM1 which is 155,189 bp long and has four subregions: 85,159 bp of large single copy (LSC), and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding ge...

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Detalles Bibliográficos
Autores principales: Park, Jongsun, Kim, Yongsung, Xi, Hong, Heo, Kyeong-In
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687557/
https://www.ncbi.nlm.nih.gov/pubmed/33365575
http://dx.doi.org/10.1080/23802359.2019.1636729
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author Park, Jongsun
Kim, Yongsung
Xi, Hong
Heo, Kyeong-In
author_facet Park, Jongsun
Kim, Yongsung
Xi, Hong
Heo, Kyeong-In
author_sort Park, Jongsun
collection PubMed
description We presented complete chloroplast genome of Coffea arabica BM1 which is 155,189 bp long and has four subregions: 85,159 bp of large single copy (LSC), and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding genes, 8 rRNAs, and 37 tRNAs). The overall GC content of the chloroplast genome is 37.4% and those in the LSC, SSC, and IR regions are 35.4, 31.3, and 43.0%, respectively. Low level of cultivar specific sequence variations was found among seven coffee chloroplast genomes.
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spelling pubmed-76875572020-12-22 The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae) Park, Jongsun Kim, Yongsung Xi, Hong Heo, Kyeong-In Mitochondrial DNA B Resour Mitogenome Announcement We presented complete chloroplast genome of Coffea arabica BM1 which is 155,189 bp long and has four subregions: 85,159 bp of large single copy (LSC), and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding genes, 8 rRNAs, and 37 tRNAs). The overall GC content of the chloroplast genome is 37.4% and those in the LSC, SSC, and IR regions are 35.4, 31.3, and 43.0%, respectively. Low level of cultivar specific sequence variations was found among seven coffee chloroplast genomes. Taylor & Francis 2019-07-16 /pmc/articles/PMC7687557/ /pubmed/33365575 http://dx.doi.org/10.1080/23802359.2019.1636729 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by-nc/4.0/
spellingShingle Mitogenome Announcement
Park, Jongsun
Kim, Yongsung
Xi, Hong
Heo, Kyeong-In
The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae)
title The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae)
title_full The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae)
title_fullStr The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae)
title_full_unstemmed The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae)
title_short The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae)
title_sort complete chloroplast genome of coffee tree, coffea arabica l. ‘blue mountain’ (rubiaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687557/
https://www.ncbi.nlm.nih.gov/pubmed/33365575
http://dx.doi.org/10.1080/23802359.2019.1636729
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