The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China

Cyphotheca, a shrub narrowly endemic to Yunnan, southwest China, is a monotypic genus of Sonerileae in Melastomataceae. The species, Cyphotheca montana, is dwindling and is listed as ‘Near Threatened (NT)’ by IUCN Red List of China. Herein, we report the complete chloroplast genome (cpDNA) sequence...

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Autores principales: Wen, Zhenying, Zeng, Sijin, Li, Tingzhang, Zhang, Guoqiang, Peng, Donghui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687601/
https://www.ncbi.nlm.nih.gov/pubmed/33365512
http://dx.doi.org/10.1080/23802359.2019.1627932
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author Wen, Zhenying
Zeng, Sijin
Li, Tingzhang
Zhang, Guoqiang
Peng, Donghui
author_facet Wen, Zhenying
Zeng, Sijin
Li, Tingzhang
Zhang, Guoqiang
Peng, Donghui
author_sort Wen, Zhenying
collection PubMed
description Cyphotheca, a shrub narrowly endemic to Yunnan, southwest China, is a monotypic genus of Sonerileae in Melastomataceae. The species, Cyphotheca montana, is dwindling and is listed as ‘Near Threatened (NT)’ by IUCN Red List of China. Herein, we report the complete chloroplast genome (cpDNA) sequence assembled from Illumina pair-end sequencing data. The complete chloroplast genome was 156,424 bp in length, which includes two inverted repeat regions (IRs) of 26,776 bp each, which were separated by a large single copy region (LSC) 85,900 bp and a small single copy region (SSC) 16,972 bp. The chloroplast genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content in the chloroplast genome of C. montana was 37.0%. The phylogenomic analysis showed that C. montana is sister to Barthea barthei.
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spelling pubmed-76876012020-12-22 The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China Wen, Zhenying Zeng, Sijin Li, Tingzhang Zhang, Guoqiang Peng, Donghui Mitochondrial DNA B Resour Mitogenome Announcement Cyphotheca, a shrub narrowly endemic to Yunnan, southwest China, is a monotypic genus of Sonerileae in Melastomataceae. The species, Cyphotheca montana, is dwindling and is listed as ‘Near Threatened (NT)’ by IUCN Red List of China. Herein, we report the complete chloroplast genome (cpDNA) sequence assembled from Illumina pair-end sequencing data. The complete chloroplast genome was 156,424 bp in length, which includes two inverted repeat regions (IRs) of 26,776 bp each, which were separated by a large single copy region (LSC) 85,900 bp and a small single copy region (SSC) 16,972 bp. The chloroplast genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content in the chloroplast genome of C. montana was 37.0%. The phylogenomic analysis showed that C. montana is sister to Barthea barthei. Taylor & Francis 2019-07-11 /pmc/articles/PMC7687601/ /pubmed/33365512 http://dx.doi.org/10.1080/23802359.2019.1627932 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by-nc/4.0/
spellingShingle Mitogenome Announcement
Wen, Zhenying
Zeng, Sijin
Li, Tingzhang
Zhang, Guoqiang
Peng, Donghui
The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China
title The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China
title_full The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China
title_fullStr The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China
title_full_unstemmed The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China
title_short The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China
title_sort complete chloroplast genome sequence of monotypic cyphotheca (melastomataceae), an endemic genus in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687601/
https://www.ncbi.nlm.nih.gov/pubmed/33365512
http://dx.doi.org/10.1080/23802359.2019.1627932
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