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The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China
Cinnamomum camphora (Lauraceae) Presl. is a unique economic plant to China. The complete chloroplast (cp) genome was sequenced and assembled by using Illumina paired-end reads data. The circular cp genome is 152,729 bp in size, including a pair of inverted repeat (IRs) regions of 20,074 bp, a large...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687621/ https://www.ncbi.nlm.nih.gov/pubmed/33365604 http://dx.doi.org/10.1080/23802359.2019.1640083 |
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author | Li, Peng Jia, Guolun Xin, Guiliang Cai, Xia |
author_facet | Li, Peng Jia, Guolun Xin, Guiliang Cai, Xia |
author_sort | Li, Peng |
collection | PubMed |
description | Cinnamomum camphora (Lauraceae) Presl. is a unique economic plant to China. The complete chloroplast (cp) genome was sequenced and assembled by using Illumina paired-end reads data. The circular cp genome is 152,729 bp in size, including a pair of inverted repeat (IRs) regions of 20,074 bp, a large single copy (LSC) region of 93,688 bp and a small single copy (SSC) region of 18,893 bp. The genome contains 127 unique genes, including 83 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs), and 8 ribosomal RNA genes (rRNAs). Besides, 19 genes possess a single intron, while another three genes (ycf3, rps12, and clpP) have a couple of introns. The GC content of entire C. camphora cp genome, LSC, SSC, and IR regions are 39.2, 38.0, 33.9, and 44.4%, respectively. Phylogenetic analysis based on the concatenated coding sequences of cp PCGs showed that C. camphora and Cinnamomum verum are closely related with each other within the genus of cinnamomum. |
format | Online Article Text |
id | pubmed-7687621 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-76876212020-12-22 The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China Li, Peng Jia, Guolun Xin, Guiliang Cai, Xia Mitochondrial DNA B Resour Mito Communication Cinnamomum camphora (Lauraceae) Presl. is a unique economic plant to China. The complete chloroplast (cp) genome was sequenced and assembled by using Illumina paired-end reads data. The circular cp genome is 152,729 bp in size, including a pair of inverted repeat (IRs) regions of 20,074 bp, a large single copy (LSC) region of 93,688 bp and a small single copy (SSC) region of 18,893 bp. The genome contains 127 unique genes, including 83 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs), and 8 ribosomal RNA genes (rRNAs). Besides, 19 genes possess a single intron, while another three genes (ycf3, rps12, and clpP) have a couple of introns. The GC content of entire C. camphora cp genome, LSC, SSC, and IR regions are 39.2, 38.0, 33.9, and 44.4%, respectively. Phylogenetic analysis based on the concatenated coding sequences of cp PCGs showed that C. camphora and Cinnamomum verum are closely related with each other within the genus of cinnamomum. Taylor & Francis 2019-07-13 /pmc/articles/PMC7687621/ /pubmed/33365604 http://dx.doi.org/10.1080/23802359.2019.1640083 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mito Communication Li, Peng Jia, Guolun Xin, Guiliang Cai, Xia The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China |
title | The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China |
title_full | The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China |
title_fullStr | The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China |
title_full_unstemmed | The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China |
title_short | The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China |
title_sort | complete chloroplast genome of cinnamomum camphora (l.) presl., a unique economic plant to china |
topic | Mito Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687621/ https://www.ncbi.nlm.nih.gov/pubmed/33365604 http://dx.doi.org/10.1080/23802359.2019.1640083 |
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