Cargando…

The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China

Cinnamomum camphora (Lauraceae) Presl. is a unique economic plant to China. The complete chloroplast (cp) genome was sequenced and assembled by using Illumina paired-end reads data. The circular cp genome is 152,729 bp in size, including a pair of inverted repeat (IRs) regions of 20,074 bp, a large...

Descripción completa

Detalles Bibliográficos
Autores principales: Li, Peng, Jia, Guolun, Xin, Guiliang, Cai, Xia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687621/
https://www.ncbi.nlm.nih.gov/pubmed/33365604
http://dx.doi.org/10.1080/23802359.2019.1640083
_version_ 1783613561601261568
author Li, Peng
Jia, Guolun
Xin, Guiliang
Cai, Xia
author_facet Li, Peng
Jia, Guolun
Xin, Guiliang
Cai, Xia
author_sort Li, Peng
collection PubMed
description Cinnamomum camphora (Lauraceae) Presl. is a unique economic plant to China. The complete chloroplast (cp) genome was sequenced and assembled by using Illumina paired-end reads data. The circular cp genome is 152,729 bp in size, including a pair of inverted repeat (IRs) regions of 20,074 bp, a large single copy (LSC) region of 93,688 bp and a small single copy (SSC) region of 18,893 bp. The genome contains 127 unique genes, including 83 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs), and 8 ribosomal RNA genes (rRNAs). Besides, 19 genes possess a single intron, while another three genes (ycf3, rps12, and clpP) have a couple of introns. The GC content of entire C. camphora cp genome, LSC, SSC, and IR regions are 39.2, 38.0, 33.9, and 44.4%, respectively. Phylogenetic analysis based on the concatenated coding sequences of cp PCGs showed that C. camphora and Cinnamomum verum are closely related with each other within the genus of cinnamomum.
format Online
Article
Text
id pubmed-7687621
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-76876212020-12-22 The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China Li, Peng Jia, Guolun Xin, Guiliang Cai, Xia Mitochondrial DNA B Resour Mito Communication Cinnamomum camphora (Lauraceae) Presl. is a unique economic plant to China. The complete chloroplast (cp) genome was sequenced and assembled by using Illumina paired-end reads data. The circular cp genome is 152,729 bp in size, including a pair of inverted repeat (IRs) regions of 20,074 bp, a large single copy (LSC) region of 93,688 bp and a small single copy (SSC) region of 18,893 bp. The genome contains 127 unique genes, including 83 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs), and 8 ribosomal RNA genes (rRNAs). Besides, 19 genes possess a single intron, while another three genes (ycf3, rps12, and clpP) have a couple of introns. The GC content of entire C. camphora cp genome, LSC, SSC, and IR regions are 39.2, 38.0, 33.9, and 44.4%, respectively. Phylogenetic analysis based on the concatenated coding sequences of cp PCGs showed that C. camphora and Cinnamomum verum are closely related with each other within the genus of cinnamomum. Taylor & Francis 2019-07-13 /pmc/articles/PMC7687621/ /pubmed/33365604 http://dx.doi.org/10.1080/23802359.2019.1640083 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mito Communication
Li, Peng
Jia, Guolun
Xin, Guiliang
Cai, Xia
The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China
title The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China
title_full The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China
title_fullStr The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China
title_full_unstemmed The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China
title_short The complete chloroplast genome of Cinnamomum camphora (L.) Presl., a unique economic plant to China
title_sort complete chloroplast genome of cinnamomum camphora (l.) presl., a unique economic plant to china
topic Mito Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687621/
https://www.ncbi.nlm.nih.gov/pubmed/33365604
http://dx.doi.org/10.1080/23802359.2019.1640083
work_keys_str_mv AT lipeng thecompletechloroplastgenomeofcinnamomumcamphoralpreslauniqueeconomicplanttochina
AT jiaguolun thecompletechloroplastgenomeofcinnamomumcamphoralpreslauniqueeconomicplanttochina
AT xinguiliang thecompletechloroplastgenomeofcinnamomumcamphoralpreslauniqueeconomicplanttochina
AT caixia thecompletechloroplastgenomeofcinnamomumcamphoralpreslauniqueeconomicplanttochina
AT lipeng completechloroplastgenomeofcinnamomumcamphoralpreslauniqueeconomicplanttochina
AT jiaguolun completechloroplastgenomeofcinnamomumcamphoralpreslauniqueeconomicplanttochina
AT xinguiliang completechloroplastgenomeofcinnamomumcamphoralpreslauniqueeconomicplanttochina
AT caixia completechloroplastgenomeofcinnamomumcamphoralpreslauniqueeconomicplanttochina