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The complete chloroplast genome sequence of Vitellaria paradoxa
Vitellaria paradoxa is an important economical tree in Africa. In this study, the complete chloroplast genome (cpDNA) sequence of V. paradoxa was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 159,725 bp in length, contains a large single copy region (LSC) of 88,720 bp and a s...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687629/ https://www.ncbi.nlm.nih.gov/pubmed/33365563 http://dx.doi.org/10.1080/23802359.2019.1636727 |
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author | Wang, Yi Yuan, Xiaolong Chen, Zhonghua Luo, Ting |
author_facet | Wang, Yi Yuan, Xiaolong Chen, Zhonghua Luo, Ting |
author_sort | Wang, Yi |
collection | PubMed |
description | Vitellaria paradoxa is an important economical tree in Africa. In this study, the complete chloroplast genome (cpDNA) sequence of V. paradoxa was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 159,725 bp in length, contains a large single copy region (LSC) of 88,720 bp and a small single copy region (SSC) of 19,338 bp, which were separated by a pair of inverted repeat (IR) regions of 25,981 bp. The genome contains 130 genes, including 85 protein-coding genes, 8 ribosomal RNA genes, and 38 transfer RNA genes. The overall GC content of the whole genome is 36.7% and the corresponding values of the LSC, SSC, and IR regions are 34.6, 30.0, and 42.9%, respectively. Further phylogenomic analysis showed that V. paradoxa clustered together with Sideroxylon wightianum. |
format | Online Article Text |
id | pubmed-7687629 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-76876292020-12-22 The complete chloroplast genome sequence of Vitellaria paradoxa Wang, Yi Yuan, Xiaolong Chen, Zhonghua Luo, Ting Mitochondrial DNA B Resour Mitogenome Announcement Vitellaria paradoxa is an important economical tree in Africa. In this study, the complete chloroplast genome (cpDNA) sequence of V. paradoxa was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 159,725 bp in length, contains a large single copy region (LSC) of 88,720 bp and a small single copy region (SSC) of 19,338 bp, which were separated by a pair of inverted repeat (IR) regions of 25,981 bp. The genome contains 130 genes, including 85 protein-coding genes, 8 ribosomal RNA genes, and 38 transfer RNA genes. The overall GC content of the whole genome is 36.7% and the corresponding values of the LSC, SSC, and IR regions are 34.6, 30.0, and 42.9%, respectively. Further phylogenomic analysis showed that V. paradoxa clustered together with Sideroxylon wightianum. Taylor & Francis 2019-07-12 /pmc/articles/PMC7687629/ /pubmed/33365563 http://dx.doi.org/10.1080/23802359.2019.1636727 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Wang, Yi Yuan, Xiaolong Chen, Zhonghua Luo, Ting The complete chloroplast genome sequence of Vitellaria paradoxa |
title | The complete chloroplast genome sequence of Vitellaria paradoxa |
title_full | The complete chloroplast genome sequence of Vitellaria paradoxa |
title_fullStr | The complete chloroplast genome sequence of Vitellaria paradoxa |
title_full_unstemmed | The complete chloroplast genome sequence of Vitellaria paradoxa |
title_short | The complete chloroplast genome sequence of Vitellaria paradoxa |
title_sort | complete chloroplast genome sequence of vitellaria paradoxa |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687629/ https://www.ncbi.nlm.nih.gov/pubmed/33365563 http://dx.doi.org/10.1080/23802359.2019.1636727 |
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