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The complete chloroplast genome sequence of Vitellaria paradoxa

Vitellaria paradoxa is an important economical tree in Africa. In this study, the complete chloroplast genome (cpDNA) sequence of V. paradoxa was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 159,725 bp in length, contains a large single copy region (LSC) of 88,720 bp and a s...

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Detalles Bibliográficos
Autores principales: Wang, Yi, Yuan, Xiaolong, Chen, Zhonghua, Luo, Ting
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687629/
https://www.ncbi.nlm.nih.gov/pubmed/33365563
http://dx.doi.org/10.1080/23802359.2019.1636727
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author Wang, Yi
Yuan, Xiaolong
Chen, Zhonghua
Luo, Ting
author_facet Wang, Yi
Yuan, Xiaolong
Chen, Zhonghua
Luo, Ting
author_sort Wang, Yi
collection PubMed
description Vitellaria paradoxa is an important economical tree in Africa. In this study, the complete chloroplast genome (cpDNA) sequence of V. paradoxa was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 159,725 bp in length, contains a large single copy region (LSC) of 88,720 bp and a small single copy region (SSC) of 19,338 bp, which were separated by a pair of inverted repeat (IR) regions of 25,981 bp. The genome contains 130 genes, including 85 protein-coding genes, 8 ribosomal RNA genes, and 38 transfer RNA genes. The overall GC content of the whole genome is 36.7% and the corresponding values of the LSC, SSC, and IR regions are 34.6, 30.0, and 42.9%, respectively. Further phylogenomic analysis showed that V. paradoxa clustered together with Sideroxylon wightianum.
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spelling pubmed-76876292020-12-22 The complete chloroplast genome sequence of Vitellaria paradoxa Wang, Yi Yuan, Xiaolong Chen, Zhonghua Luo, Ting Mitochondrial DNA B Resour Mitogenome Announcement Vitellaria paradoxa is an important economical tree in Africa. In this study, the complete chloroplast genome (cpDNA) sequence of V. paradoxa was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 159,725 bp in length, contains a large single copy region (LSC) of 88,720 bp and a small single copy region (SSC) of 19,338 bp, which were separated by a pair of inverted repeat (IR) regions of 25,981 bp. The genome contains 130 genes, including 85 protein-coding genes, 8 ribosomal RNA genes, and 38 transfer RNA genes. The overall GC content of the whole genome is 36.7% and the corresponding values of the LSC, SSC, and IR regions are 34.6, 30.0, and 42.9%, respectively. Further phylogenomic analysis showed that V. paradoxa clustered together with Sideroxylon wightianum. Taylor & Francis 2019-07-12 /pmc/articles/PMC7687629/ /pubmed/33365563 http://dx.doi.org/10.1080/23802359.2019.1636727 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Wang, Yi
Yuan, Xiaolong
Chen, Zhonghua
Luo, Ting
The complete chloroplast genome sequence of Vitellaria paradoxa
title The complete chloroplast genome sequence of Vitellaria paradoxa
title_full The complete chloroplast genome sequence of Vitellaria paradoxa
title_fullStr The complete chloroplast genome sequence of Vitellaria paradoxa
title_full_unstemmed The complete chloroplast genome sequence of Vitellaria paradoxa
title_short The complete chloroplast genome sequence of Vitellaria paradoxa
title_sort complete chloroplast genome sequence of vitellaria paradoxa
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687629/
https://www.ncbi.nlm.nih.gov/pubmed/33365563
http://dx.doi.org/10.1080/23802359.2019.1636727
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