Characterization of the complete chloroplast genome of Actinidia Melanandra (Actinidiaceae)

The whole chloroplast (cp) genome sequence of Actinidia melanandra has been characterized from Illumina pair-end sequencing. The complete cp genome was 156,124 bp in length, containing a large single-copy region (LSC) of 88,006 bp and a small single-copy region (SSC) of 20,332 bp, which were separat...

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Autores principales: Zhao, Yuemei, Zhao, Zhixin, Tang, Weili, Li, Xiaoling, Zhao, Yongping, Gao, Baoyun, Xie, Xiaodan, Zhang, Xiaobin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687634/
https://www.ncbi.nlm.nih.gov/pubmed/33365471
http://dx.doi.org/10.1080/23802359.2019.1623129
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author Zhao, Yuemei
Zhao, Zhixin
Tang, Weili
Li, Xiaoling
Zhao, Yongping
Gao, Baoyun
Xie, Xiaodan
Zhang, Xiaobin
author_facet Zhao, Yuemei
Zhao, Zhixin
Tang, Weili
Li, Xiaoling
Zhao, Yongping
Gao, Baoyun
Xie, Xiaodan
Zhang, Xiaobin
author_sort Zhao, Yuemei
collection PubMed
description The whole chloroplast (cp) genome sequence of Actinidia melanandra has been characterized from Illumina pair-end sequencing. The complete cp genome was 156,124 bp in length, containing a large single-copy region (LSC) of 88,006 bp and a small single-copy region (SSC) of 20,332 bp, which were separated by a pair of inverted repeat (IR) regions of 23,893 bp. The genome contained 131 genes, including 84 protein-coding genes, 39 tRNA genes, and 8 ribosomal RNA genes (4 rRNA species). Most genes occur as a single copy, while 17 gene species are duplicated. Phylogenetic analysis revealed that A. melanandra is closely related to the species of A. deliciosa and A. chinensis.
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spelling pubmed-76876342020-12-22 Characterization of the complete chloroplast genome of Actinidia Melanandra (Actinidiaceae) Zhao, Yuemei Zhao, Zhixin Tang, Weili Li, Xiaoling Zhao, Yongping Gao, Baoyun Xie, Xiaodan Zhang, Xiaobin Mitochondrial DNA B Resour Mitogenome Announcement The whole chloroplast (cp) genome sequence of Actinidia melanandra has been characterized from Illumina pair-end sequencing. The complete cp genome was 156,124 bp in length, containing a large single-copy region (LSC) of 88,006 bp and a small single-copy region (SSC) of 20,332 bp, which were separated by a pair of inverted repeat (IR) regions of 23,893 bp. The genome contained 131 genes, including 84 protein-coding genes, 39 tRNA genes, and 8 ribosomal RNA genes (4 rRNA species). Most genes occur as a single copy, while 17 gene species are duplicated. Phylogenetic analysis revealed that A. melanandra is closely related to the species of A. deliciosa and A. chinensis. Taylor & Francis 2019-07-11 /pmc/articles/PMC7687634/ /pubmed/33365471 http://dx.doi.org/10.1080/23802359.2019.1623129 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhao, Yuemei
Zhao, Zhixin
Tang, Weili
Li, Xiaoling
Zhao, Yongping
Gao, Baoyun
Xie, Xiaodan
Zhang, Xiaobin
Characterization of the complete chloroplast genome of Actinidia Melanandra (Actinidiaceae)
title Characterization of the complete chloroplast genome of Actinidia Melanandra (Actinidiaceae)
title_full Characterization of the complete chloroplast genome of Actinidia Melanandra (Actinidiaceae)
title_fullStr Characterization of the complete chloroplast genome of Actinidia Melanandra (Actinidiaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of Actinidia Melanandra (Actinidiaceae)
title_short Characterization of the complete chloroplast genome of Actinidia Melanandra (Actinidiaceae)
title_sort characterization of the complete chloroplast genome of actinidia melanandra (actinidiaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687634/
https://www.ncbi.nlm.nih.gov/pubmed/33365471
http://dx.doi.org/10.1080/23802359.2019.1623129
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