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The complete chloroplast genome sequence of Abies chensiensis (Pinaceae)
Abies chensiensis is listed as a threatened species in the Red List and categorized as key protected wild plants in China. Here, we determined the complete chloroplast genome of A. chensiensis using the Illumina MiSeq platform. The genome was 121,795 bp in length, comprising a large single copy (LSC...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687642/ https://www.ncbi.nlm.nih.gov/pubmed/33365947 http://dx.doi.org/10.1080/23802359.2018.1542992 |
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author | Su, Lei Zhao, Peng-Fei Lu, Xiao-Fang Shao, Yi-Zhen |
author_facet | Su, Lei Zhao, Peng-Fei Lu, Xiao-Fang Shao, Yi-Zhen |
author_sort | Su, Lei |
collection | PubMed |
description | Abies chensiensis is listed as a threatened species in the Red List and categorized as key protected wild plants in China. Here, we determined the complete chloroplast genome of A. chensiensis using the Illumina MiSeq platform. The genome was 121,795 bp in length, comprising a large single copy (LSC) region of 67,160 bp, a small single copy (SSC) region of 54,107 bp, and two inverted repeat regions (IRa and IRb) of 264 bp each. It was composed of 114 genes, including 68 peptide-encoding genes, 35 transfer RNAs (tRNAs), four ribosomal RNAs (rRNAs), six open reading frames and one pseudogene. Phylogenetic analysis revealed that A. chensiensis was most closely related to A. beshanzuensis, with high bootstrap values. The present research will provide potential genetic resources for further conservation and management strategies. |
format | Online Article Text |
id | pubmed-7687642 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-76876422020-12-22 The complete chloroplast genome sequence of Abies chensiensis (Pinaceae) Su, Lei Zhao, Peng-Fei Lu, Xiao-Fang Shao, Yi-Zhen Mitochondrial DNA B Resour Mitogenome Announcements Abies chensiensis is listed as a threatened species in the Red List and categorized as key protected wild plants in China. Here, we determined the complete chloroplast genome of A. chensiensis using the Illumina MiSeq platform. The genome was 121,795 bp in length, comprising a large single copy (LSC) region of 67,160 bp, a small single copy (SSC) region of 54,107 bp, and two inverted repeat regions (IRa and IRb) of 264 bp each. It was composed of 114 genes, including 68 peptide-encoding genes, 35 transfer RNAs (tRNAs), four ribosomal RNAs (rRNAs), six open reading frames and one pseudogene. Phylogenetic analysis revealed that A. chensiensis was most closely related to A. beshanzuensis, with high bootstrap values. The present research will provide potential genetic resources for further conservation and management strategies. Taylor & Francis 2019-10-01 /pmc/articles/PMC7687642/ /pubmed/33365947 http://dx.doi.org/10.1080/23802359.2018.1542992 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcements Su, Lei Zhao, Peng-Fei Lu, Xiao-Fang Shao, Yi-Zhen The complete chloroplast genome sequence of Abies chensiensis (Pinaceae) |
title | The complete chloroplast genome sequence of Abies chensiensis (Pinaceae) |
title_full | The complete chloroplast genome sequence of Abies chensiensis (Pinaceae) |
title_fullStr | The complete chloroplast genome sequence of Abies chensiensis (Pinaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Abies chensiensis (Pinaceae) |
title_short | The complete chloroplast genome sequence of Abies chensiensis (Pinaceae) |
title_sort | complete chloroplast genome sequence of abies chensiensis (pinaceae) |
topic | Mitogenome Announcements |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687642/ https://www.ncbi.nlm.nih.gov/pubmed/33365947 http://dx.doi.org/10.1080/23802359.2018.1542992 |
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