Complete chloroplast genome of Reineckia carnea and its implications for the phylogenetic position within Nolinoideae (Asparagaceae)

Reineckia carnea is an important horticultural and medicinal plant in East Asia. Here, we determined the first complete chloroplast genome of R. carnea using genome skimming approach. The cp genome was 157,059 bp long, with a large single-copy region (LSC) of 85,474 bp and a small single-copy region...

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Autores principales: Sun, Zhong-Shuai, Cao, Peng-He, Li, Yue-Ling, Huang, Sheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687646/
https://www.ncbi.nlm.nih.gov/pubmed/33365439
http://dx.doi.org/10.1080/23802359.2019.1623119
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author Sun, Zhong-Shuai
Cao, Peng-He
Li, Yue-Ling
Huang, Sheng
author_facet Sun, Zhong-Shuai
Cao, Peng-He
Li, Yue-Ling
Huang, Sheng
author_sort Sun, Zhong-Shuai
collection PubMed
description Reineckia carnea is an important horticultural and medicinal plant in East Asia. Here, we determined the first complete chloroplast genome of R. carnea using genome skimming approach. The cp genome was 157,059 bp long, with a large single-copy region (LSC) of 85,474 bp and a small single-copy region (SSC) of 18,535 bp separated by a pair of inverted repeats (IRs) of 26,525 bp. It encodes 132 genes, including 86 protein-coding genes, 38 tRNA genes, and eight ribosomal RNA genes. The phylogenetic analysis indicated that R. carnea is close related to Rohdea chinensis.
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spelling pubmed-76876462020-12-22 Complete chloroplast genome of Reineckia carnea and its implications for the phylogenetic position within Nolinoideae (Asparagaceae) Sun, Zhong-Shuai Cao, Peng-He Li, Yue-Ling Huang, Sheng Mitochondrial DNA B Resour Mitogenome Announcement Reineckia carnea is an important horticultural and medicinal plant in East Asia. Here, we determined the first complete chloroplast genome of R. carnea using genome skimming approach. The cp genome was 157,059 bp long, with a large single-copy region (LSC) of 85,474 bp and a small single-copy region (SSC) of 18,535 bp separated by a pair of inverted repeats (IRs) of 26,525 bp. It encodes 132 genes, including 86 protein-coding genes, 38 tRNA genes, and eight ribosomal RNA genes. The phylogenetic analysis indicated that R. carnea is close related to Rohdea chinensis. Taylor & Francis 2019-07-10 /pmc/articles/PMC7687646/ /pubmed/33365439 http://dx.doi.org/10.1080/23802359.2019.1623119 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Sun, Zhong-Shuai
Cao, Peng-He
Li, Yue-Ling
Huang, Sheng
Complete chloroplast genome of Reineckia carnea and its implications for the phylogenetic position within Nolinoideae (Asparagaceae)
title Complete chloroplast genome of Reineckia carnea and its implications for the phylogenetic position within Nolinoideae (Asparagaceae)
title_full Complete chloroplast genome of Reineckia carnea and its implications for the phylogenetic position within Nolinoideae (Asparagaceae)
title_fullStr Complete chloroplast genome of Reineckia carnea and its implications for the phylogenetic position within Nolinoideae (Asparagaceae)
title_full_unstemmed Complete chloroplast genome of Reineckia carnea and its implications for the phylogenetic position within Nolinoideae (Asparagaceae)
title_short Complete chloroplast genome of Reineckia carnea and its implications for the phylogenetic position within Nolinoideae (Asparagaceae)
title_sort complete chloroplast genome of reineckia carnea and its implications for the phylogenetic position within nolinoideae (asparagaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687646/
https://www.ncbi.nlm.nih.gov/pubmed/33365439
http://dx.doi.org/10.1080/23802359.2019.1623119
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