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Big behavior: challenges and opportunities in a new era of deep behavior profiling

The assessment of rodent behavior forms a cornerstone of preclinical assessment in neuroscience research. Nonetheless, the true and almost limitless potential of behavioral analysis has been inaccessible to scientists until very recently. Now, in the age of machine vision and deep learning, it is po...

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Autores principales: von Ziegler, Lukas, Sturman, Oliver, Bohacek, Johannes
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7688651/
https://www.ncbi.nlm.nih.gov/pubmed/32599604
http://dx.doi.org/10.1038/s41386-020-0751-7
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author von Ziegler, Lukas
Sturman, Oliver
Bohacek, Johannes
author_facet von Ziegler, Lukas
Sturman, Oliver
Bohacek, Johannes
author_sort von Ziegler, Lukas
collection PubMed
description The assessment of rodent behavior forms a cornerstone of preclinical assessment in neuroscience research. Nonetheless, the true and almost limitless potential of behavioral analysis has been inaccessible to scientists until very recently. Now, in the age of machine vision and deep learning, it is possible to extract and quantify almost infinite numbers of behavioral variables, to break behaviors down into subcategories and even into small behavioral units, syllables or motifs. However, the rapidly growing field of behavioral neuroethology is experiencing birthing pains. The community has not yet consolidated its methods, and new algorithms transfer poorly between labs. Benchmarking experiments as well as the large, well-annotated behavior datasets required are missing. Meanwhile, big data problems have started arising and we currently lack platforms for sharing large datasets—akin to sequencing repositories in genomics. Additionally, the average behavioral research lab does not have access to the latest tools to extract and analyze behavior, as their implementation requires advanced computational skills. Even so, the field is brimming with excitement and boundless opportunity. This review aims to highlight the potential of recent developments in the field of behavioral analysis, whilst trying to guide a consensus on practical issues concerning data collection and data sharing.
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spelling pubmed-76886512020-12-03 Big behavior: challenges and opportunities in a new era of deep behavior profiling von Ziegler, Lukas Sturman, Oliver Bohacek, Johannes Neuropsychopharmacology Neuropsychopharmacology Reviews The assessment of rodent behavior forms a cornerstone of preclinical assessment in neuroscience research. Nonetheless, the true and almost limitless potential of behavioral analysis has been inaccessible to scientists until very recently. Now, in the age of machine vision and deep learning, it is possible to extract and quantify almost infinite numbers of behavioral variables, to break behaviors down into subcategories and even into small behavioral units, syllables or motifs. However, the rapidly growing field of behavioral neuroethology is experiencing birthing pains. The community has not yet consolidated its methods, and new algorithms transfer poorly between labs. Benchmarking experiments as well as the large, well-annotated behavior datasets required are missing. Meanwhile, big data problems have started arising and we currently lack platforms for sharing large datasets—akin to sequencing repositories in genomics. Additionally, the average behavioral research lab does not have access to the latest tools to extract and analyze behavior, as their implementation requires advanced computational skills. Even so, the field is brimming with excitement and boundless opportunity. This review aims to highlight the potential of recent developments in the field of behavioral analysis, whilst trying to guide a consensus on practical issues concerning data collection and data sharing. Springer International Publishing 2020-06-29 2021-01 /pmc/articles/PMC7688651/ /pubmed/32599604 http://dx.doi.org/10.1038/s41386-020-0751-7 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Neuropsychopharmacology Reviews
von Ziegler, Lukas
Sturman, Oliver
Bohacek, Johannes
Big behavior: challenges and opportunities in a new era of deep behavior profiling
title Big behavior: challenges and opportunities in a new era of deep behavior profiling
title_full Big behavior: challenges and opportunities in a new era of deep behavior profiling
title_fullStr Big behavior: challenges and opportunities in a new era of deep behavior profiling
title_full_unstemmed Big behavior: challenges and opportunities in a new era of deep behavior profiling
title_short Big behavior: challenges and opportunities in a new era of deep behavior profiling
title_sort big behavior: challenges and opportunities in a new era of deep behavior profiling
topic Neuropsychopharmacology Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7688651/
https://www.ncbi.nlm.nih.gov/pubmed/32599604
http://dx.doi.org/10.1038/s41386-020-0751-7
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