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Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort

BACKGROUND: Increasing genetic variants associated with sepsis have been identified by candidate-gene and genome-wide association studies, but single variants conferred minimal alterations in risk prediction. Our aim is to evaluate whether a weighted genetic risk score (wGRS) that aggregates informa...

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Autores principales: Lu, Hongxiang, Wen, Dalin, Sun, Jianhui, Du, Juan, Qiao, Liang, Zhang, Huacai, Zeng, Ling, Zhang, Lianyang, Jiang, Jianxin, Zhang, Anqiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7689156/
https://www.ncbi.nlm.nih.gov/pubmed/33281864
http://dx.doi.org/10.3389/fgene.2020.545564
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author Lu, Hongxiang
Wen, Dalin
Sun, Jianhui
Du, Juan
Qiao, Liang
Zhang, Huacai
Zeng, Ling
Zhang, Lianyang
Jiang, Jianxin
Zhang, Anqiang
author_facet Lu, Hongxiang
Wen, Dalin
Sun, Jianhui
Du, Juan
Qiao, Liang
Zhang, Huacai
Zeng, Ling
Zhang, Lianyang
Jiang, Jianxin
Zhang, Anqiang
author_sort Lu, Hongxiang
collection PubMed
description BACKGROUND: Increasing genetic variants associated with sepsis have been identified by candidate-gene and genome-wide association studies, but single variants conferred minimal alterations in risk prediction. Our aim is to evaluate whether a weighted genetic risk score (wGRS) that aggregates information from multiple variants could improve risk discrimination of traumatic sepsis. METHODS: Sixty-four genetic variants potential relating to sepsis were genotyped in Chinese trauma cohort. Genetic variants with mean decrease accuracy (MDA) > 1.0 by random forest algorithms were selected to construct the multilocus wGRS. The area under the curve (AUC) and net reclassification improvement (NRI) were adopted to evaluate the discriminatory and reclassification ability of weighted genetic risk score (wGRS). RESULTS: Seventeen variants were extracted to construct the wGRS in 883 trauma patients. The wGRS was significantly associated with sepsis after trauma (OR = 2.19, 95% CI = 1.53–3.15, P = 2.01 × 10(–5)) after being adjusted by age, sex, and ISS. Patients with higher wGRS have an increasing incidence of traumatic sepsis (P(trend) = 6.81 × 10(–8)), higher SOFA (P(trend) = 5.00 × 10(–3)), and APACHE II score (P(trend) = 1.00 × 10(–3)). The AUC of the risk prediction model incorporating wGRS into the clinical variables was 0.768 (95% CI = 0.739–0.796), with an increase of 3.40% (P = 8.00 × 10(–4)) vs. clinical factor-only model. Furthermore, the NRI increased 25.18% (95% CI = 17.84–32.51%) (P = 6.00 × 10(–5)). CONCLUSION: Our finding indicated that genetic variants could enhance the predictive power of the risk model for sepsis and highlighted the application among trauma patients, suggesting that the sepsis risk assessment model will be a promising screening and prediction tool for the high-risk population.
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spelling pubmed-76891562020-12-04 Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort Lu, Hongxiang Wen, Dalin Sun, Jianhui Du, Juan Qiao, Liang Zhang, Huacai Zeng, Ling Zhang, Lianyang Jiang, Jianxin Zhang, Anqiang Front Genet Genetics BACKGROUND: Increasing genetic variants associated with sepsis have been identified by candidate-gene and genome-wide association studies, but single variants conferred minimal alterations in risk prediction. Our aim is to evaluate whether a weighted genetic risk score (wGRS) that aggregates information from multiple variants could improve risk discrimination of traumatic sepsis. METHODS: Sixty-four genetic variants potential relating to sepsis were genotyped in Chinese trauma cohort. Genetic variants with mean decrease accuracy (MDA) > 1.0 by random forest algorithms were selected to construct the multilocus wGRS. The area under the curve (AUC) and net reclassification improvement (NRI) were adopted to evaluate the discriminatory and reclassification ability of weighted genetic risk score (wGRS). RESULTS: Seventeen variants were extracted to construct the wGRS in 883 trauma patients. The wGRS was significantly associated with sepsis after trauma (OR = 2.19, 95% CI = 1.53–3.15, P = 2.01 × 10(–5)) after being adjusted by age, sex, and ISS. Patients with higher wGRS have an increasing incidence of traumatic sepsis (P(trend) = 6.81 × 10(–8)), higher SOFA (P(trend) = 5.00 × 10(–3)), and APACHE II score (P(trend) = 1.00 × 10(–3)). The AUC of the risk prediction model incorporating wGRS into the clinical variables was 0.768 (95% CI = 0.739–0.796), with an increase of 3.40% (P = 8.00 × 10(–4)) vs. clinical factor-only model. Furthermore, the NRI increased 25.18% (95% CI = 17.84–32.51%) (P = 6.00 × 10(–5)). CONCLUSION: Our finding indicated that genetic variants could enhance the predictive power of the risk model for sepsis and highlighted the application among trauma patients, suggesting that the sepsis risk assessment model will be a promising screening and prediction tool for the high-risk population. Frontiers Media S.A. 2020-11-12 /pmc/articles/PMC7689156/ /pubmed/33281864 http://dx.doi.org/10.3389/fgene.2020.545564 Text en Copyright © 2020 Lu, Wen, Sun, Du, Qiao, Zhang, Zeng, Zhang, Jiang and Zhang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Lu, Hongxiang
Wen, Dalin
Sun, Jianhui
Du, Juan
Qiao, Liang
Zhang, Huacai
Zeng, Ling
Zhang, Lianyang
Jiang, Jianxin
Zhang, Anqiang
Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort
title Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort
title_full Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort
title_fullStr Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort
title_full_unstemmed Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort
title_short Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort
title_sort polygenic risk score for early prediction of sepsis risk in the polytrauma screening cohort
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7689156/
https://www.ncbi.nlm.nih.gov/pubmed/33281864
http://dx.doi.org/10.3389/fgene.2020.545564
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