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Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort
BACKGROUND: Increasing genetic variants associated with sepsis have been identified by candidate-gene and genome-wide association studies, but single variants conferred minimal alterations in risk prediction. Our aim is to evaluate whether a weighted genetic risk score (wGRS) that aggregates informa...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7689156/ https://www.ncbi.nlm.nih.gov/pubmed/33281864 http://dx.doi.org/10.3389/fgene.2020.545564 |
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author | Lu, Hongxiang Wen, Dalin Sun, Jianhui Du, Juan Qiao, Liang Zhang, Huacai Zeng, Ling Zhang, Lianyang Jiang, Jianxin Zhang, Anqiang |
author_facet | Lu, Hongxiang Wen, Dalin Sun, Jianhui Du, Juan Qiao, Liang Zhang, Huacai Zeng, Ling Zhang, Lianyang Jiang, Jianxin Zhang, Anqiang |
author_sort | Lu, Hongxiang |
collection | PubMed |
description | BACKGROUND: Increasing genetic variants associated with sepsis have been identified by candidate-gene and genome-wide association studies, but single variants conferred minimal alterations in risk prediction. Our aim is to evaluate whether a weighted genetic risk score (wGRS) that aggregates information from multiple variants could improve risk discrimination of traumatic sepsis. METHODS: Sixty-four genetic variants potential relating to sepsis were genotyped in Chinese trauma cohort. Genetic variants with mean decrease accuracy (MDA) > 1.0 by random forest algorithms were selected to construct the multilocus wGRS. The area under the curve (AUC) and net reclassification improvement (NRI) were adopted to evaluate the discriminatory and reclassification ability of weighted genetic risk score (wGRS). RESULTS: Seventeen variants were extracted to construct the wGRS in 883 trauma patients. The wGRS was significantly associated with sepsis after trauma (OR = 2.19, 95% CI = 1.53–3.15, P = 2.01 × 10(–5)) after being adjusted by age, sex, and ISS. Patients with higher wGRS have an increasing incidence of traumatic sepsis (P(trend) = 6.81 × 10(–8)), higher SOFA (P(trend) = 5.00 × 10(–3)), and APACHE II score (P(trend) = 1.00 × 10(–3)). The AUC of the risk prediction model incorporating wGRS into the clinical variables was 0.768 (95% CI = 0.739–0.796), with an increase of 3.40% (P = 8.00 × 10(–4)) vs. clinical factor-only model. Furthermore, the NRI increased 25.18% (95% CI = 17.84–32.51%) (P = 6.00 × 10(–5)). CONCLUSION: Our finding indicated that genetic variants could enhance the predictive power of the risk model for sepsis and highlighted the application among trauma patients, suggesting that the sepsis risk assessment model will be a promising screening and prediction tool for the high-risk population. |
format | Online Article Text |
id | pubmed-7689156 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-76891562020-12-04 Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort Lu, Hongxiang Wen, Dalin Sun, Jianhui Du, Juan Qiao, Liang Zhang, Huacai Zeng, Ling Zhang, Lianyang Jiang, Jianxin Zhang, Anqiang Front Genet Genetics BACKGROUND: Increasing genetic variants associated with sepsis have been identified by candidate-gene and genome-wide association studies, but single variants conferred minimal alterations in risk prediction. Our aim is to evaluate whether a weighted genetic risk score (wGRS) that aggregates information from multiple variants could improve risk discrimination of traumatic sepsis. METHODS: Sixty-four genetic variants potential relating to sepsis were genotyped in Chinese trauma cohort. Genetic variants with mean decrease accuracy (MDA) > 1.0 by random forest algorithms were selected to construct the multilocus wGRS. The area under the curve (AUC) and net reclassification improvement (NRI) were adopted to evaluate the discriminatory and reclassification ability of weighted genetic risk score (wGRS). RESULTS: Seventeen variants were extracted to construct the wGRS in 883 trauma patients. The wGRS was significantly associated with sepsis after trauma (OR = 2.19, 95% CI = 1.53–3.15, P = 2.01 × 10(–5)) after being adjusted by age, sex, and ISS. Patients with higher wGRS have an increasing incidence of traumatic sepsis (P(trend) = 6.81 × 10(–8)), higher SOFA (P(trend) = 5.00 × 10(–3)), and APACHE II score (P(trend) = 1.00 × 10(–3)). The AUC of the risk prediction model incorporating wGRS into the clinical variables was 0.768 (95% CI = 0.739–0.796), with an increase of 3.40% (P = 8.00 × 10(–4)) vs. clinical factor-only model. Furthermore, the NRI increased 25.18% (95% CI = 17.84–32.51%) (P = 6.00 × 10(–5)). CONCLUSION: Our finding indicated that genetic variants could enhance the predictive power of the risk model for sepsis and highlighted the application among trauma patients, suggesting that the sepsis risk assessment model will be a promising screening and prediction tool for the high-risk population. Frontiers Media S.A. 2020-11-12 /pmc/articles/PMC7689156/ /pubmed/33281864 http://dx.doi.org/10.3389/fgene.2020.545564 Text en Copyright © 2020 Lu, Wen, Sun, Du, Qiao, Zhang, Zeng, Zhang, Jiang and Zhang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Lu, Hongxiang Wen, Dalin Sun, Jianhui Du, Juan Qiao, Liang Zhang, Huacai Zeng, Ling Zhang, Lianyang Jiang, Jianxin Zhang, Anqiang Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort |
title | Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort |
title_full | Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort |
title_fullStr | Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort |
title_full_unstemmed | Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort |
title_short | Polygenic Risk Score for Early Prediction of Sepsis Risk in the Polytrauma Screening Cohort |
title_sort | polygenic risk score for early prediction of sepsis risk in the polytrauma screening cohort |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7689156/ https://www.ncbi.nlm.nih.gov/pubmed/33281864 http://dx.doi.org/10.3389/fgene.2020.545564 |
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