Cargando…

Microbiota composition data of imago and larval stage of the anhydrobiotic midge

The ability of larvae of a non-biting midge Polypedilum vanderplanki (Chironomidae) to withstand complete desiccation is a remarkable natural example of adaptation to extreme environment. In anhydrobiosis the larvae lose up to 99.2% of water and stay in a dry form until rainfall in natural environme...

Descripción completa

Detalles Bibliográficos
Autores principales: Shaikhutdinov, Nurislam, Gogoleva, Natalia, Gusev, Oleg, Shagimardanova, Elena
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7689402/
https://www.ncbi.nlm.nih.gov/pubmed/33294522
http://dx.doi.org/10.1016/j.dib.2020.106527
_version_ 1783613859453468672
author Shaikhutdinov, Nurislam
Gogoleva, Natalia
Gusev, Oleg
Shagimardanova, Elena
author_facet Shaikhutdinov, Nurislam
Gogoleva, Natalia
Gusev, Oleg
Shagimardanova, Elena
author_sort Shaikhutdinov, Nurislam
collection PubMed
description The ability of larvae of a non-biting midge Polypedilum vanderplanki (Chironomidae) to withstand complete desiccation is a remarkable natural example of adaptation to extreme environment. In anhydrobiosis the larvae lose up to 99.2% of water and stay in a dry form until rainfall in natural environment or up to several decades in laboratory maintaining ability to restore activity soon after rehydration [1]. In the desiccated state, the larvae tolerate a variety of abiotic stresses, including high radiation exposure (7000Gry of (60)Co gamma rays) [2]. Such a cross-resistance to desiccation and ionizing radiation is a characteristic of many anhydrobiotic organisms and believed to be based on similar molecular mechanisms. Microorganisms associated with the anhydrobiotic midge can also sustain desiccation and thus be radiation-resistant because desiccation-resistant prokaryotes are shown to be cross-resistant to ionizing radiation [3]. Microorganisms inhabiting larvae of the anhydrobiotic midge can also sustain desiccation and probably can sustain high doses of ionizing radiation. Therefore, it would be of interest to analyze the taxonomic and functional composition of microbiome of the anhydrobiotic midge. Sequencing data for the total DNA of anhydrobiotic organisms, which also contain reads derived from symbiotic microorganisms provide a promising opportunity to identify microorganisms with remarkable adaptation. It is known that at least some protective genes, such as late embryogenesis abundant (LEA) genes appeared in the genome of the midge by probable horizontal gene transfer from bacteria [1]. We performed shotgun sequencing of imago and larvae DNA samples using HiSeq 2000 and Genome Analyzer IIX System platforms. To assess microbiome diversity specific to anhydrobiotic midges, we analyzed Pool-seq data of the natural population of imago and Pool-seq data of final instar larvae. Data has been deposited in NCBI BioProject repository at NCBI under the accession number PRJNA659554 and consists of raw sequence data.
format Online
Article
Text
id pubmed-7689402
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-76894022020-12-07 Microbiota composition data of imago and larval stage of the anhydrobiotic midge Shaikhutdinov, Nurislam Gogoleva, Natalia Gusev, Oleg Shagimardanova, Elena Data Brief Data Article The ability of larvae of a non-biting midge Polypedilum vanderplanki (Chironomidae) to withstand complete desiccation is a remarkable natural example of adaptation to extreme environment. In anhydrobiosis the larvae lose up to 99.2% of water and stay in a dry form until rainfall in natural environment or up to several decades in laboratory maintaining ability to restore activity soon after rehydration [1]. In the desiccated state, the larvae tolerate a variety of abiotic stresses, including high radiation exposure (7000Gry of (60)Co gamma rays) [2]. Such a cross-resistance to desiccation and ionizing radiation is a characteristic of many anhydrobiotic organisms and believed to be based on similar molecular mechanisms. Microorganisms associated with the anhydrobiotic midge can also sustain desiccation and thus be radiation-resistant because desiccation-resistant prokaryotes are shown to be cross-resistant to ionizing radiation [3]. Microorganisms inhabiting larvae of the anhydrobiotic midge can also sustain desiccation and probably can sustain high doses of ionizing radiation. Therefore, it would be of interest to analyze the taxonomic and functional composition of microbiome of the anhydrobiotic midge. Sequencing data for the total DNA of anhydrobiotic organisms, which also contain reads derived from symbiotic microorganisms provide a promising opportunity to identify microorganisms with remarkable adaptation. It is known that at least some protective genes, such as late embryogenesis abundant (LEA) genes appeared in the genome of the midge by probable horizontal gene transfer from bacteria [1]. We performed shotgun sequencing of imago and larvae DNA samples using HiSeq 2000 and Genome Analyzer IIX System platforms. To assess microbiome diversity specific to anhydrobiotic midges, we analyzed Pool-seq data of the natural population of imago and Pool-seq data of final instar larvae. Data has been deposited in NCBI BioProject repository at NCBI under the accession number PRJNA659554 and consists of raw sequence data. Elsevier 2020-11-18 /pmc/articles/PMC7689402/ /pubmed/33294522 http://dx.doi.org/10.1016/j.dib.2020.106527 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Shaikhutdinov, Nurislam
Gogoleva, Natalia
Gusev, Oleg
Shagimardanova, Elena
Microbiota composition data of imago and larval stage of the anhydrobiotic midge
title Microbiota composition data of imago and larval stage of the anhydrobiotic midge
title_full Microbiota composition data of imago and larval stage of the anhydrobiotic midge
title_fullStr Microbiota composition data of imago and larval stage of the anhydrobiotic midge
title_full_unstemmed Microbiota composition data of imago and larval stage of the anhydrobiotic midge
title_short Microbiota composition data of imago and larval stage of the anhydrobiotic midge
title_sort microbiota composition data of imago and larval stage of the anhydrobiotic midge
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7689402/
https://www.ncbi.nlm.nih.gov/pubmed/33294522
http://dx.doi.org/10.1016/j.dib.2020.106527
work_keys_str_mv AT shaikhutdinovnurislam microbiotacompositiondataofimagoandlarvalstageoftheanhydrobioticmidge
AT gogolevanatalia microbiotacompositiondataofimagoandlarvalstageoftheanhydrobioticmidge
AT gusevoleg microbiotacompositiondataofimagoandlarvalstageoftheanhydrobioticmidge
AT shagimardanovaelena microbiotacompositiondataofimagoandlarvalstageoftheanhydrobioticmidge