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Machine learning issues and opportunities in ultrafast particle classification for label-free microflow cytometry

Machine learning offers promising solutions for high-throughput single-particle analysis in label-free imaging microflow cytomtery. However, the throughput of online operations such as cell sorting is often limited by the large computational cost of the image analysis while offline operations may re...

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Autores principales: Lugnan, Alessio, Gooskens, Emmanuel, Vatin, Jeremy, Dambre, Joni, Bienstman, Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7691359/
https://www.ncbi.nlm.nih.gov/pubmed/33244129
http://dx.doi.org/10.1038/s41598-020-77765-w
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author Lugnan, Alessio
Gooskens, Emmanuel
Vatin, Jeremy
Dambre, Joni
Bienstman, Peter
author_facet Lugnan, Alessio
Gooskens, Emmanuel
Vatin, Jeremy
Dambre, Joni
Bienstman, Peter
author_sort Lugnan, Alessio
collection PubMed
description Machine learning offers promising solutions for high-throughput single-particle analysis in label-free imaging microflow cytomtery. However, the throughput of online operations such as cell sorting is often limited by the large computational cost of the image analysis while offline operations may require the storage of an exceedingly large amount of data. Moreover, the training of machine learning systems can be easily biased by slight drifts of the measurement conditions, giving rise to a significant but difficult to detect degradation of the learned operations. We propose a simple and versatile machine learning approach to perform microparticle classification at an extremely low computational cost, showing good generalization over large variations in particle position. We present proof-of-principle classification of interference patterns projected by flowing transparent PMMA microbeads with diameters of [Formula: see text] and [Formula: see text] . To this end, a simple, cheap and compact label-free microflow cytometer is employed. We also discuss in detail the detection and prevention of machine learning bias in training and testing due to slight drifts of the measurement conditions. Moreover, we investigate the implications of modifying the projected particle pattern by means of a diffraction grating, in the context of optical extreme learning machine implementations.
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spelling pubmed-76913592020-11-27 Machine learning issues and opportunities in ultrafast particle classification for label-free microflow cytometry Lugnan, Alessio Gooskens, Emmanuel Vatin, Jeremy Dambre, Joni Bienstman, Peter Sci Rep Article Machine learning offers promising solutions for high-throughput single-particle analysis in label-free imaging microflow cytomtery. However, the throughput of online operations such as cell sorting is often limited by the large computational cost of the image analysis while offline operations may require the storage of an exceedingly large amount of data. Moreover, the training of machine learning systems can be easily biased by slight drifts of the measurement conditions, giving rise to a significant but difficult to detect degradation of the learned operations. We propose a simple and versatile machine learning approach to perform microparticle classification at an extremely low computational cost, showing good generalization over large variations in particle position. We present proof-of-principle classification of interference patterns projected by flowing transparent PMMA microbeads with diameters of [Formula: see text] and [Formula: see text] . To this end, a simple, cheap and compact label-free microflow cytometer is employed. We also discuss in detail the detection and prevention of machine learning bias in training and testing due to slight drifts of the measurement conditions. Moreover, we investigate the implications of modifying the projected particle pattern by means of a diffraction grating, in the context of optical extreme learning machine implementations. Nature Publishing Group UK 2020-11-26 /pmc/articles/PMC7691359/ /pubmed/33244129 http://dx.doi.org/10.1038/s41598-020-77765-w Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Lugnan, Alessio
Gooskens, Emmanuel
Vatin, Jeremy
Dambre, Joni
Bienstman, Peter
Machine learning issues and opportunities in ultrafast particle classification for label-free microflow cytometry
title Machine learning issues and opportunities in ultrafast particle classification for label-free microflow cytometry
title_full Machine learning issues and opportunities in ultrafast particle classification for label-free microflow cytometry
title_fullStr Machine learning issues and opportunities in ultrafast particle classification for label-free microflow cytometry
title_full_unstemmed Machine learning issues and opportunities in ultrafast particle classification for label-free microflow cytometry
title_short Machine learning issues and opportunities in ultrafast particle classification for label-free microflow cytometry
title_sort machine learning issues and opportunities in ultrafast particle classification for label-free microflow cytometry
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7691359/
https://www.ncbi.nlm.nih.gov/pubmed/33244129
http://dx.doi.org/10.1038/s41598-020-77765-w
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