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Dynamics of Ligand Binding to a Rigid Glycosidase
The single‐domain GH11 glycosidase from Bacillus circulans (BCX) is involved in the degradation of hemicellulose, which is one of the most abundant renewable biomaterials in nature. We demonstrate that BCX in solution undergoes minimal structural changes during turnover. NMR spectroscopy results sho...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7693232/ https://www.ncbi.nlm.nih.gov/pubmed/32533782 http://dx.doi.org/10.1002/anie.202003236 |
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author | Ben Bdira, Fredj Waudby, Christopher A. Volkov, Alexander N. Schröder, Sybrin P. AB, Eiso Codée, Jeroen D. C. Overkleeft, Hermen S. Aerts, Johannes M. F. G. van Ingen, Hugo Ubbink, Marcellus |
author_facet | Ben Bdira, Fredj Waudby, Christopher A. Volkov, Alexander N. Schröder, Sybrin P. AB, Eiso Codée, Jeroen D. C. Overkleeft, Hermen S. Aerts, Johannes M. F. G. van Ingen, Hugo Ubbink, Marcellus |
author_sort | Ben Bdira, Fredj |
collection | PubMed |
description | The single‐domain GH11 glycosidase from Bacillus circulans (BCX) is involved in the degradation of hemicellulose, which is one of the most abundant renewable biomaterials in nature. We demonstrate that BCX in solution undergoes minimal structural changes during turnover. NMR spectroscopy results show that the rigid protein matrix provides a frame for fast substrate binding in multiple conformations, accompanied by slow conversion, which is attributed to an enzyme‐induced substrate distortion. A model is proposed in which the rigid enzyme takes advantage of substrate flexibility to induce a conformation that facilitates the acyl formation step of the hydrolysis reaction. |
format | Online Article Text |
id | pubmed-7693232 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-76932322020-12-11 Dynamics of Ligand Binding to a Rigid Glycosidase Ben Bdira, Fredj Waudby, Christopher A. Volkov, Alexander N. Schröder, Sybrin P. AB, Eiso Codée, Jeroen D. C. Overkleeft, Hermen S. Aerts, Johannes M. F. G. van Ingen, Hugo Ubbink, Marcellus Angew Chem Int Ed Engl Research Articles The single‐domain GH11 glycosidase from Bacillus circulans (BCX) is involved in the degradation of hemicellulose, which is one of the most abundant renewable biomaterials in nature. We demonstrate that BCX in solution undergoes minimal structural changes during turnover. NMR spectroscopy results show that the rigid protein matrix provides a frame for fast substrate binding in multiple conformations, accompanied by slow conversion, which is attributed to an enzyme‐induced substrate distortion. A model is proposed in which the rigid enzyme takes advantage of substrate flexibility to induce a conformation that facilitates the acyl formation step of the hydrolysis reaction. John Wiley and Sons Inc. 2020-09-03 2020-11-09 /pmc/articles/PMC7693232/ /pubmed/32533782 http://dx.doi.org/10.1002/anie.202003236 Text en © 2020 The Authors. Published by Wiley-VCH GmbH This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Ben Bdira, Fredj Waudby, Christopher A. Volkov, Alexander N. Schröder, Sybrin P. AB, Eiso Codée, Jeroen D. C. Overkleeft, Hermen S. Aerts, Johannes M. F. G. van Ingen, Hugo Ubbink, Marcellus Dynamics of Ligand Binding to a Rigid Glycosidase |
title | Dynamics of Ligand Binding to a Rigid Glycosidase
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title_full | Dynamics of Ligand Binding to a Rigid Glycosidase
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title_fullStr | Dynamics of Ligand Binding to a Rigid Glycosidase
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title_full_unstemmed | Dynamics of Ligand Binding to a Rigid Glycosidase
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title_short | Dynamics of Ligand Binding to a Rigid Glycosidase
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title_sort | dynamics of ligand binding to a rigid glycosidase |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7693232/ https://www.ncbi.nlm.nih.gov/pubmed/32533782 http://dx.doi.org/10.1002/anie.202003236 |
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