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Dynamics of Ligand Binding to a Rigid Glycosidase

The single‐domain GH11 glycosidase from Bacillus circulans (BCX) is involved in the degradation of hemicellulose, which is one of the most abundant renewable biomaterials in nature. We demonstrate that BCX in solution undergoes minimal structural changes during turnover. NMR spectroscopy results sho...

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Autores principales: Ben Bdira, Fredj, Waudby, Christopher A., Volkov, Alexander N., Schröder, Sybrin P., AB, Eiso, Codée, Jeroen D. C., Overkleeft, Hermen S., Aerts, Johannes M. F. G., van Ingen, Hugo, Ubbink, Marcellus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7693232/
https://www.ncbi.nlm.nih.gov/pubmed/32533782
http://dx.doi.org/10.1002/anie.202003236
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author Ben Bdira, Fredj
Waudby, Christopher A.
Volkov, Alexander N.
Schröder, Sybrin P.
AB, Eiso
Codée, Jeroen D. C.
Overkleeft, Hermen S.
Aerts, Johannes M. F. G.
van Ingen, Hugo
Ubbink, Marcellus
author_facet Ben Bdira, Fredj
Waudby, Christopher A.
Volkov, Alexander N.
Schröder, Sybrin P.
AB, Eiso
Codée, Jeroen D. C.
Overkleeft, Hermen S.
Aerts, Johannes M. F. G.
van Ingen, Hugo
Ubbink, Marcellus
author_sort Ben Bdira, Fredj
collection PubMed
description The single‐domain GH11 glycosidase from Bacillus circulans (BCX) is involved in the degradation of hemicellulose, which is one of the most abundant renewable biomaterials in nature. We demonstrate that BCX in solution undergoes minimal structural changes during turnover. NMR spectroscopy results show that the rigid protein matrix provides a frame for fast substrate binding in multiple conformations, accompanied by slow conversion, which is attributed to an enzyme‐induced substrate distortion. A model is proposed in which the rigid enzyme takes advantage of substrate flexibility to induce a conformation that facilitates the acyl formation step of the hydrolysis reaction.
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spelling pubmed-76932322020-12-11 Dynamics of Ligand Binding to a Rigid Glycosidase Ben Bdira, Fredj Waudby, Christopher A. Volkov, Alexander N. Schröder, Sybrin P. AB, Eiso Codée, Jeroen D. C. Overkleeft, Hermen S. Aerts, Johannes M. F. G. van Ingen, Hugo Ubbink, Marcellus Angew Chem Int Ed Engl Research Articles The single‐domain GH11 glycosidase from Bacillus circulans (BCX) is involved in the degradation of hemicellulose, which is one of the most abundant renewable biomaterials in nature. We demonstrate that BCX in solution undergoes minimal structural changes during turnover. NMR spectroscopy results show that the rigid protein matrix provides a frame for fast substrate binding in multiple conformations, accompanied by slow conversion, which is attributed to an enzyme‐induced substrate distortion. A model is proposed in which the rigid enzyme takes advantage of substrate flexibility to induce a conformation that facilitates the acyl formation step of the hydrolysis reaction. John Wiley and Sons Inc. 2020-09-03 2020-11-09 /pmc/articles/PMC7693232/ /pubmed/32533782 http://dx.doi.org/10.1002/anie.202003236 Text en © 2020 The Authors. Published by Wiley-VCH GmbH This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Ben Bdira, Fredj
Waudby, Christopher A.
Volkov, Alexander N.
Schröder, Sybrin P.
AB, Eiso
Codée, Jeroen D. C.
Overkleeft, Hermen S.
Aerts, Johannes M. F. G.
van Ingen, Hugo
Ubbink, Marcellus
Dynamics of Ligand Binding to a Rigid Glycosidase
title Dynamics of Ligand Binding to a Rigid Glycosidase
title_full Dynamics of Ligand Binding to a Rigid Glycosidase
title_fullStr Dynamics of Ligand Binding to a Rigid Glycosidase
title_full_unstemmed Dynamics of Ligand Binding to a Rigid Glycosidase
title_short Dynamics of Ligand Binding to a Rigid Glycosidase
title_sort dynamics of ligand binding to a rigid glycosidase
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7693232/
https://www.ncbi.nlm.nih.gov/pubmed/32533782
http://dx.doi.org/10.1002/anie.202003236
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