Cargando…

CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image

Computed tomography (CT) images are currently being adopted as the visual evidence for COVID-19 diagnosis in clinical practice. Automated detection of COVID-19 infection from CT images based on deep models is important for faster examination. Unfortunately, collecting large-scale training data syste...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Pengyi, Zhong, Yunxin, Deng, Yulin, Tang, Xiaoying, Li, Xiaoqiong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7693680/
https://www.ncbi.nlm.nih.gov/pubmed/33153105
http://dx.doi.org/10.3390/diagnostics10110901
_version_ 1783614800769581056
author Zhang, Pengyi
Zhong, Yunxin
Deng, Yulin
Tang, Xiaoying
Li, Xiaoqiong
author_facet Zhang, Pengyi
Zhong, Yunxin
Deng, Yulin
Tang, Xiaoying
Li, Xiaoqiong
author_sort Zhang, Pengyi
collection PubMed
description Computed tomography (CT) images are currently being adopted as the visual evidence for COVID-19 diagnosis in clinical practice. Automated detection of COVID-19 infection from CT images based on deep models is important for faster examination. Unfortunately, collecting large-scale training data systematically in the early stage is difficult. To address this problem, we explore the feasibility of learning deep models for lung and COVID-19 infection segmentation from a single radiological image by resorting to synthesizing diverse radiological images. Specifically, we propose a novel conditional generative model, called CoSinGAN, which can be learned from a single radiological image with a given condition, i.e., the annotation mask of the lungs and infected regions. Our CoSinGAN is able to capture the conditional distribution of the single radiological image, and further synthesize high-resolution (512 × 512) and diverse radiological images that match the input conditions precisely. We evaluate the efficacy of CoSinGAN in learning lung and infection segmentation from very few radiological images by performing 5-fold cross validation on COVID-19-CT-Seg dataset (20 CT cases) and an independent testing on the MosMed dataset (50 CT cases). Both 2D U-Net and 3D U-Net, learned from four CT slices by using our CoSinGAN, have achieved notable infection segmentation performance, surpassing the COVID-19-CT-Seg-Benchmark, i.e., the counterparts trained on an average of 704 CT slices, by a large margin. Such results strongly confirm that our method has the potential to learn COVID-19 infection segmentation from few radiological images in the early stage of COVID-19 pandemic.
format Online
Article
Text
id pubmed-7693680
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-76936802020-11-28 CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image Zhang, Pengyi Zhong, Yunxin Deng, Yulin Tang, Xiaoying Li, Xiaoqiong Diagnostics (Basel) Article Computed tomography (CT) images are currently being adopted as the visual evidence for COVID-19 diagnosis in clinical practice. Automated detection of COVID-19 infection from CT images based on deep models is important for faster examination. Unfortunately, collecting large-scale training data systematically in the early stage is difficult. To address this problem, we explore the feasibility of learning deep models for lung and COVID-19 infection segmentation from a single radiological image by resorting to synthesizing diverse radiological images. Specifically, we propose a novel conditional generative model, called CoSinGAN, which can be learned from a single radiological image with a given condition, i.e., the annotation mask of the lungs and infected regions. Our CoSinGAN is able to capture the conditional distribution of the single radiological image, and further synthesize high-resolution (512 × 512) and diverse radiological images that match the input conditions precisely. We evaluate the efficacy of CoSinGAN in learning lung and infection segmentation from very few radiological images by performing 5-fold cross validation on COVID-19-CT-Seg dataset (20 CT cases) and an independent testing on the MosMed dataset (50 CT cases). Both 2D U-Net and 3D U-Net, learned from four CT slices by using our CoSinGAN, have achieved notable infection segmentation performance, surpassing the COVID-19-CT-Seg-Benchmark, i.e., the counterparts trained on an average of 704 CT slices, by a large margin. Such results strongly confirm that our method has the potential to learn COVID-19 infection segmentation from few radiological images in the early stage of COVID-19 pandemic. MDPI 2020-11-03 /pmc/articles/PMC7693680/ /pubmed/33153105 http://dx.doi.org/10.3390/diagnostics10110901 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhang, Pengyi
Zhong, Yunxin
Deng, Yulin
Tang, Xiaoying
Li, Xiaoqiong
CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image
title CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image
title_full CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image
title_fullStr CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image
title_full_unstemmed CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image
title_short CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image
title_sort cosingan: learning covid-19 infection segmentation from a single radiological image
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7693680/
https://www.ncbi.nlm.nih.gov/pubmed/33153105
http://dx.doi.org/10.3390/diagnostics10110901
work_keys_str_mv AT zhangpengyi cosinganlearningcovid19infectionsegmentationfromasingleradiologicalimage
AT zhongyunxin cosinganlearningcovid19infectionsegmentationfromasingleradiologicalimage
AT dengyulin cosinganlearningcovid19infectionsegmentationfromasingleradiologicalimage
AT tangxiaoying cosinganlearningcovid19infectionsegmentationfromasingleradiologicalimage
AT lixiaoqiong cosinganlearningcovid19infectionsegmentationfromasingleradiologicalimage