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CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image
Computed tomography (CT) images are currently being adopted as the visual evidence for COVID-19 diagnosis in clinical practice. Automated detection of COVID-19 infection from CT images based on deep models is important for faster examination. Unfortunately, collecting large-scale training data syste...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7693680/ https://www.ncbi.nlm.nih.gov/pubmed/33153105 http://dx.doi.org/10.3390/diagnostics10110901 |
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author | Zhang, Pengyi Zhong, Yunxin Deng, Yulin Tang, Xiaoying Li, Xiaoqiong |
author_facet | Zhang, Pengyi Zhong, Yunxin Deng, Yulin Tang, Xiaoying Li, Xiaoqiong |
author_sort | Zhang, Pengyi |
collection | PubMed |
description | Computed tomography (CT) images are currently being adopted as the visual evidence for COVID-19 diagnosis in clinical practice. Automated detection of COVID-19 infection from CT images based on deep models is important for faster examination. Unfortunately, collecting large-scale training data systematically in the early stage is difficult. To address this problem, we explore the feasibility of learning deep models for lung and COVID-19 infection segmentation from a single radiological image by resorting to synthesizing diverse radiological images. Specifically, we propose a novel conditional generative model, called CoSinGAN, which can be learned from a single radiological image with a given condition, i.e., the annotation mask of the lungs and infected regions. Our CoSinGAN is able to capture the conditional distribution of the single radiological image, and further synthesize high-resolution (512 × 512) and diverse radiological images that match the input conditions precisely. We evaluate the efficacy of CoSinGAN in learning lung and infection segmentation from very few radiological images by performing 5-fold cross validation on COVID-19-CT-Seg dataset (20 CT cases) and an independent testing on the MosMed dataset (50 CT cases). Both 2D U-Net and 3D U-Net, learned from four CT slices by using our CoSinGAN, have achieved notable infection segmentation performance, surpassing the COVID-19-CT-Seg-Benchmark, i.e., the counterparts trained on an average of 704 CT slices, by a large margin. Such results strongly confirm that our method has the potential to learn COVID-19 infection segmentation from few radiological images in the early stage of COVID-19 pandemic. |
format | Online Article Text |
id | pubmed-7693680 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-76936802020-11-28 CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image Zhang, Pengyi Zhong, Yunxin Deng, Yulin Tang, Xiaoying Li, Xiaoqiong Diagnostics (Basel) Article Computed tomography (CT) images are currently being adopted as the visual evidence for COVID-19 diagnosis in clinical practice. Automated detection of COVID-19 infection from CT images based on deep models is important for faster examination. Unfortunately, collecting large-scale training data systematically in the early stage is difficult. To address this problem, we explore the feasibility of learning deep models for lung and COVID-19 infection segmentation from a single radiological image by resorting to synthesizing diverse radiological images. Specifically, we propose a novel conditional generative model, called CoSinGAN, which can be learned from a single radiological image with a given condition, i.e., the annotation mask of the lungs and infected regions. Our CoSinGAN is able to capture the conditional distribution of the single radiological image, and further synthesize high-resolution (512 × 512) and diverse radiological images that match the input conditions precisely. We evaluate the efficacy of CoSinGAN in learning lung and infection segmentation from very few radiological images by performing 5-fold cross validation on COVID-19-CT-Seg dataset (20 CT cases) and an independent testing on the MosMed dataset (50 CT cases). Both 2D U-Net and 3D U-Net, learned from four CT slices by using our CoSinGAN, have achieved notable infection segmentation performance, surpassing the COVID-19-CT-Seg-Benchmark, i.e., the counterparts trained on an average of 704 CT slices, by a large margin. Such results strongly confirm that our method has the potential to learn COVID-19 infection segmentation from few radiological images in the early stage of COVID-19 pandemic. MDPI 2020-11-03 /pmc/articles/PMC7693680/ /pubmed/33153105 http://dx.doi.org/10.3390/diagnostics10110901 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zhang, Pengyi Zhong, Yunxin Deng, Yulin Tang, Xiaoying Li, Xiaoqiong CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image |
title | CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image |
title_full | CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image |
title_fullStr | CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image |
title_full_unstemmed | CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image |
title_short | CoSinGAN: Learning COVID-19 Infection Segmentation from a Single Radiological Image |
title_sort | cosingan: learning covid-19 infection segmentation from a single radiological image |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7693680/ https://www.ncbi.nlm.nih.gov/pubmed/33153105 http://dx.doi.org/10.3390/diagnostics10110901 |
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