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Decoding semi-automated title-abstract screening: findings from a convenience sample of reviews

BACKGROUND: We evaluated the benefits and risks of using the Abstrackr machine learning (ML) tool to semi-automate title-abstract screening and explored whether Abstrackr’s predictions varied by review or study-level characteristics. METHODS: For a convenience sample of 16 reviews for which adequate...

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Autores principales: Gates, Allison, Gates, Michelle, DaRosa, Daniel, Elliott, Sarah A., Pillay, Jennifer, Rahman, Sholeh, Vandermeer, Ben, Hartling, Lisa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7694314/
https://www.ncbi.nlm.nih.gov/pubmed/33243276
http://dx.doi.org/10.1186/s13643-020-01528-x
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author Gates, Allison
Gates, Michelle
DaRosa, Daniel
Elliott, Sarah A.
Pillay, Jennifer
Rahman, Sholeh
Vandermeer, Ben
Hartling, Lisa
author_facet Gates, Allison
Gates, Michelle
DaRosa, Daniel
Elliott, Sarah A.
Pillay, Jennifer
Rahman, Sholeh
Vandermeer, Ben
Hartling, Lisa
author_sort Gates, Allison
collection PubMed
description BACKGROUND: We evaluated the benefits and risks of using the Abstrackr machine learning (ML) tool to semi-automate title-abstract screening and explored whether Abstrackr’s predictions varied by review or study-level characteristics. METHODS: For a convenience sample of 16 reviews for which adequate data were available to address our objectives (11 systematic reviews and 5 rapid reviews), we screened a 200-record training set in Abstrackr and downloaded the relevance (relevant or irrelevant) of the remaining records, as predicted by the tool. We retrospectively simulated the liberal-accelerated screening approach. We estimated the time savings and proportion missed compared with dual independent screening. For reviews with pairwise meta-analyses, we evaluated changes to the pooled effects after removing the missed studies. We explored whether the tool’s predictions varied by review and study-level characteristics. RESULTS: Using the ML-assisted liberal-accelerated approach, we wrongly excluded 0 to 3 (0 to 14%) records that were included in the final reports, but saved a median (IQR) 26 (9, 42) h of screening time. One missed study was included in eight pairwise meta-analyses in one systematic review. The pooled effect for just one of those meta-analyses changed considerably (from MD (95% CI) − 1.53 (− 2.92, − 0.15) to − 1.17 (− 2.70, 0.36)). Of 802 records in the final reports, 87% were correctly predicted as relevant. The correctness of the predictions did not differ by review (systematic or rapid, P = 0.37) or intervention type (simple or complex, P = 0.47). The predictions were more often correct in reviews with multiple (89%) vs. single (83%) research questions (P = 0.01), or that included only trials (95%) vs. multiple designs (86%) (P = 0.003). At the study level, trials (91%), mixed methods (100%), and qualitative (93%) studies were more often correctly predicted as relevant compared with observational studies (79%) or reviews (83%) (P = 0.0006). Studies at high or unclear (88%) vs. low risk of bias (80%) (P = 0.039), and those published more recently (mean (SD) 2008 (7) vs. 2006 (10), P = 0.02) were more often correctly predicted as relevant. CONCLUSION: Our screening approach saved time and may be suitable in conditions where the limited risk of missing relevant records is acceptable. Several of our findings are paradoxical and require further study to fully understand the tasks to which ML-assisted screening is best suited. The findings should be interpreted in light of the fact that the protocol was prepared for the funder, but not published a priori. Because we used a convenience sample, the findings may be prone to selection bias. The results may not be generalizable to other samples of reviews, ML tools, or screening approaches. The small number of missed studies across reviews with pairwise meta-analyses hindered strong conclusions about the effect of missed studies on the results and conclusions of systematic reviews.
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spelling pubmed-76943142020-11-30 Decoding semi-automated title-abstract screening: findings from a convenience sample of reviews Gates, Allison Gates, Michelle DaRosa, Daniel Elliott, Sarah A. Pillay, Jennifer Rahman, Sholeh Vandermeer, Ben Hartling, Lisa Syst Rev Research BACKGROUND: We evaluated the benefits and risks of using the Abstrackr machine learning (ML) tool to semi-automate title-abstract screening and explored whether Abstrackr’s predictions varied by review or study-level characteristics. METHODS: For a convenience sample of 16 reviews for which adequate data were available to address our objectives (11 systematic reviews and 5 rapid reviews), we screened a 200-record training set in Abstrackr and downloaded the relevance (relevant or irrelevant) of the remaining records, as predicted by the tool. We retrospectively simulated the liberal-accelerated screening approach. We estimated the time savings and proportion missed compared with dual independent screening. For reviews with pairwise meta-analyses, we evaluated changes to the pooled effects after removing the missed studies. We explored whether the tool’s predictions varied by review and study-level characteristics. RESULTS: Using the ML-assisted liberal-accelerated approach, we wrongly excluded 0 to 3 (0 to 14%) records that were included in the final reports, but saved a median (IQR) 26 (9, 42) h of screening time. One missed study was included in eight pairwise meta-analyses in one systematic review. The pooled effect for just one of those meta-analyses changed considerably (from MD (95% CI) − 1.53 (− 2.92, − 0.15) to − 1.17 (− 2.70, 0.36)). Of 802 records in the final reports, 87% were correctly predicted as relevant. The correctness of the predictions did not differ by review (systematic or rapid, P = 0.37) or intervention type (simple or complex, P = 0.47). The predictions were more often correct in reviews with multiple (89%) vs. single (83%) research questions (P = 0.01), or that included only trials (95%) vs. multiple designs (86%) (P = 0.003). At the study level, trials (91%), mixed methods (100%), and qualitative (93%) studies were more often correctly predicted as relevant compared with observational studies (79%) or reviews (83%) (P = 0.0006). Studies at high or unclear (88%) vs. low risk of bias (80%) (P = 0.039), and those published more recently (mean (SD) 2008 (7) vs. 2006 (10), P = 0.02) were more often correctly predicted as relevant. CONCLUSION: Our screening approach saved time and may be suitable in conditions where the limited risk of missing relevant records is acceptable. Several of our findings are paradoxical and require further study to fully understand the tasks to which ML-assisted screening is best suited. The findings should be interpreted in light of the fact that the protocol was prepared for the funder, but not published a priori. Because we used a convenience sample, the findings may be prone to selection bias. The results may not be generalizable to other samples of reviews, ML tools, or screening approaches. The small number of missed studies across reviews with pairwise meta-analyses hindered strong conclusions about the effect of missed studies on the results and conclusions of systematic reviews. BioMed Central 2020-11-27 /pmc/articles/PMC7694314/ /pubmed/33243276 http://dx.doi.org/10.1186/s13643-020-01528-x Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Gates, Allison
Gates, Michelle
DaRosa, Daniel
Elliott, Sarah A.
Pillay, Jennifer
Rahman, Sholeh
Vandermeer, Ben
Hartling, Lisa
Decoding semi-automated title-abstract screening: findings from a convenience sample of reviews
title Decoding semi-automated title-abstract screening: findings from a convenience sample of reviews
title_full Decoding semi-automated title-abstract screening: findings from a convenience sample of reviews
title_fullStr Decoding semi-automated title-abstract screening: findings from a convenience sample of reviews
title_full_unstemmed Decoding semi-automated title-abstract screening: findings from a convenience sample of reviews
title_short Decoding semi-automated title-abstract screening: findings from a convenience sample of reviews
title_sort decoding semi-automated title-abstract screening: findings from a convenience sample of reviews
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7694314/
https://www.ncbi.nlm.nih.gov/pubmed/33243276
http://dx.doi.org/10.1186/s13643-020-01528-x
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