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Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients
Approximately 30% of medulloblastoma (MB) patients exhibit metastasis at initial diagnosis, which often leads to a poor prognosis. Here, by using univariate Cox regression analysis, two machine learning methods (Lasso-penalized Cox regression and random survival forest-variable hunting (RSF-VH)), an...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7695392/ https://www.ncbi.nlm.nih.gov/pubmed/33159021 http://dx.doi.org/10.18632/aging.103923 |
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author | Chen, Kui Huang, Bingsong Yan, Shan Xu, Siyi Li, Keqin Zhang, Kuiming Wang, Qi Zhuang, Zhongwei Wei, Liang Zhang, Yanfei Liu, Min Lian, Hao Zhong, Chunlong |
author_facet | Chen, Kui Huang, Bingsong Yan, Shan Xu, Siyi Li, Keqin Zhang, Kuiming Wang, Qi Zhuang, Zhongwei Wei, Liang Zhang, Yanfei Liu, Min Lian, Hao Zhong, Chunlong |
author_sort | Chen, Kui |
collection | PubMed |
description | Approximately 30% of medulloblastoma (MB) patients exhibit metastasis at initial diagnosis, which often leads to a poor prognosis. Here, by using univariate Cox regression analysis, two machine learning methods (Lasso-penalized Cox regression and random survival forest-variable hunting (RSF-VH)), and multivariate Cox regression analysis, we established two metastasis-related prognostic models, including the 47-mRNA-based model based on the Lasso method and the 21-mRNA-based model based on the RSF-VH method. In terms of the results of the receiver operating characteristic (ROC) curve analyses, we selected the 47-mRNA metastasis-associated model with the higher area under the curve (AUC). The 47-mRNA-based prognostic model could classify MB patients into two subgroups with different prognoses. The ROC analyses also suggested that the 47-mRNA metastasis-associated model may have a better predictive ability than MB subgroup. Multivariable Cox regression analysis demonstrated that the 47-mRNA-based model was independent of other clinical characteristics. In addition, a nomogram comprising the 47-mRNA-based model was built. The results of ROC analyses suggested that the nomogram had good discrimination ability. Our 47-mRNA metastasis-related prognostic model and nomogram might be an efficient and valuable tool for overall survival (OS) prediction and provide information for individualized treatment decisions in patients with MB. |
format | Online Article Text |
id | pubmed-7695392 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-76953922020-12-04 Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients Chen, Kui Huang, Bingsong Yan, Shan Xu, Siyi Li, Keqin Zhang, Kuiming Wang, Qi Zhuang, Zhongwei Wei, Liang Zhang, Yanfei Liu, Min Lian, Hao Zhong, Chunlong Aging (Albany NY) Research Paper Approximately 30% of medulloblastoma (MB) patients exhibit metastasis at initial diagnosis, which often leads to a poor prognosis. Here, by using univariate Cox regression analysis, two machine learning methods (Lasso-penalized Cox regression and random survival forest-variable hunting (RSF-VH)), and multivariate Cox regression analysis, we established two metastasis-related prognostic models, including the 47-mRNA-based model based on the Lasso method and the 21-mRNA-based model based on the RSF-VH method. In terms of the results of the receiver operating characteristic (ROC) curve analyses, we selected the 47-mRNA metastasis-associated model with the higher area under the curve (AUC). The 47-mRNA-based prognostic model could classify MB patients into two subgroups with different prognoses. The ROC analyses also suggested that the 47-mRNA metastasis-associated model may have a better predictive ability than MB subgroup. Multivariable Cox regression analysis demonstrated that the 47-mRNA-based model was independent of other clinical characteristics. In addition, a nomogram comprising the 47-mRNA-based model was built. The results of ROC analyses suggested that the nomogram had good discrimination ability. Our 47-mRNA metastasis-related prognostic model and nomogram might be an efficient and valuable tool for overall survival (OS) prediction and provide information for individualized treatment decisions in patients with MB. Impact Journals 2020-11-05 /pmc/articles/PMC7695392/ /pubmed/33159021 http://dx.doi.org/10.18632/aging.103923 Text en Copyright: © 2020 Chen et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Chen, Kui Huang, Bingsong Yan, Shan Xu, Siyi Li, Keqin Zhang, Kuiming Wang, Qi Zhuang, Zhongwei Wei, Liang Zhang, Yanfei Liu, Min Lian, Hao Zhong, Chunlong Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients |
title | Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients |
title_full | Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients |
title_fullStr | Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients |
title_full_unstemmed | Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients |
title_short | Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients |
title_sort | two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7695392/ https://www.ncbi.nlm.nih.gov/pubmed/33159021 http://dx.doi.org/10.18632/aging.103923 |
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