Cargando…

Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients

Approximately 30% of medulloblastoma (MB) patients exhibit metastasis at initial diagnosis, which often leads to a poor prognosis. Here, by using univariate Cox regression analysis, two machine learning methods (Lasso-penalized Cox regression and random survival forest-variable hunting (RSF-VH)), an...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Kui, Huang, Bingsong, Yan, Shan, Xu, Siyi, Li, Keqin, Zhang, Kuiming, Wang, Qi, Zhuang, Zhongwei, Wei, Liang, Zhang, Yanfei, Liu, Min, Lian, Hao, Zhong, Chunlong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7695392/
https://www.ncbi.nlm.nih.gov/pubmed/33159021
http://dx.doi.org/10.18632/aging.103923
_version_ 1783615178080780288
author Chen, Kui
Huang, Bingsong
Yan, Shan
Xu, Siyi
Li, Keqin
Zhang, Kuiming
Wang, Qi
Zhuang, Zhongwei
Wei, Liang
Zhang, Yanfei
Liu, Min
Lian, Hao
Zhong, Chunlong
author_facet Chen, Kui
Huang, Bingsong
Yan, Shan
Xu, Siyi
Li, Keqin
Zhang, Kuiming
Wang, Qi
Zhuang, Zhongwei
Wei, Liang
Zhang, Yanfei
Liu, Min
Lian, Hao
Zhong, Chunlong
author_sort Chen, Kui
collection PubMed
description Approximately 30% of medulloblastoma (MB) patients exhibit metastasis at initial diagnosis, which often leads to a poor prognosis. Here, by using univariate Cox regression analysis, two machine learning methods (Lasso-penalized Cox regression and random survival forest-variable hunting (RSF-VH)), and multivariate Cox regression analysis, we established two metastasis-related prognostic models, including the 47-mRNA-based model based on the Lasso method and the 21-mRNA-based model based on the RSF-VH method. In terms of the results of the receiver operating characteristic (ROC) curve analyses, we selected the 47-mRNA metastasis-associated model with the higher area under the curve (AUC). The 47-mRNA-based prognostic model could classify MB patients into two subgroups with different prognoses. The ROC analyses also suggested that the 47-mRNA metastasis-associated model may have a better predictive ability than MB subgroup. Multivariable Cox regression analysis demonstrated that the 47-mRNA-based model was independent of other clinical characteristics. In addition, a nomogram comprising the 47-mRNA-based model was built. The results of ROC analyses suggested that the nomogram had good discrimination ability. Our 47-mRNA metastasis-related prognostic model and nomogram might be an efficient and valuable tool for overall survival (OS) prediction and provide information for individualized treatment decisions in patients with MB.
format Online
Article
Text
id pubmed-7695392
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Impact Journals
record_format MEDLINE/PubMed
spelling pubmed-76953922020-12-04 Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients Chen, Kui Huang, Bingsong Yan, Shan Xu, Siyi Li, Keqin Zhang, Kuiming Wang, Qi Zhuang, Zhongwei Wei, Liang Zhang, Yanfei Liu, Min Lian, Hao Zhong, Chunlong Aging (Albany NY) Research Paper Approximately 30% of medulloblastoma (MB) patients exhibit metastasis at initial diagnosis, which often leads to a poor prognosis. Here, by using univariate Cox regression analysis, two machine learning methods (Lasso-penalized Cox regression and random survival forest-variable hunting (RSF-VH)), and multivariate Cox regression analysis, we established two metastasis-related prognostic models, including the 47-mRNA-based model based on the Lasso method and the 21-mRNA-based model based on the RSF-VH method. In terms of the results of the receiver operating characteristic (ROC) curve analyses, we selected the 47-mRNA metastasis-associated model with the higher area under the curve (AUC). The 47-mRNA-based prognostic model could classify MB patients into two subgroups with different prognoses. The ROC analyses also suggested that the 47-mRNA metastasis-associated model may have a better predictive ability than MB subgroup. Multivariable Cox regression analysis demonstrated that the 47-mRNA-based model was independent of other clinical characteristics. In addition, a nomogram comprising the 47-mRNA-based model was built. The results of ROC analyses suggested that the nomogram had good discrimination ability. Our 47-mRNA metastasis-related prognostic model and nomogram might be an efficient and valuable tool for overall survival (OS) prediction and provide information for individualized treatment decisions in patients with MB. Impact Journals 2020-11-05 /pmc/articles/PMC7695392/ /pubmed/33159021 http://dx.doi.org/10.18632/aging.103923 Text en Copyright: © 2020 Chen et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Chen, Kui
Huang, Bingsong
Yan, Shan
Xu, Siyi
Li, Keqin
Zhang, Kuiming
Wang, Qi
Zhuang, Zhongwei
Wei, Liang
Zhang, Yanfei
Liu, Min
Lian, Hao
Zhong, Chunlong
Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients
title Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients
title_full Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients
title_fullStr Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients
title_full_unstemmed Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients
title_short Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients
title_sort two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7695392/
https://www.ncbi.nlm.nih.gov/pubmed/33159021
http://dx.doi.org/10.18632/aging.103923
work_keys_str_mv AT chenkui twomachinelearningmethodsidentifyametastasisrelatedprognosticmodelthatpredictsoverallsurvivalinmedulloblastomapatients
AT huangbingsong twomachinelearningmethodsidentifyametastasisrelatedprognosticmodelthatpredictsoverallsurvivalinmedulloblastomapatients
AT yanshan twomachinelearningmethodsidentifyametastasisrelatedprognosticmodelthatpredictsoverallsurvivalinmedulloblastomapatients
AT xusiyi twomachinelearningmethodsidentifyametastasisrelatedprognosticmodelthatpredictsoverallsurvivalinmedulloblastomapatients
AT likeqin twomachinelearningmethodsidentifyametastasisrelatedprognosticmodelthatpredictsoverallsurvivalinmedulloblastomapatients
AT zhangkuiming twomachinelearningmethodsidentifyametastasisrelatedprognosticmodelthatpredictsoverallsurvivalinmedulloblastomapatients
AT wangqi twomachinelearningmethodsidentifyametastasisrelatedprognosticmodelthatpredictsoverallsurvivalinmedulloblastomapatients
AT zhuangzhongwei twomachinelearningmethodsidentifyametastasisrelatedprognosticmodelthatpredictsoverallsurvivalinmedulloblastomapatients
AT weiliang twomachinelearningmethodsidentifyametastasisrelatedprognosticmodelthatpredictsoverallsurvivalinmedulloblastomapatients
AT zhangyanfei twomachinelearningmethodsidentifyametastasisrelatedprognosticmodelthatpredictsoverallsurvivalinmedulloblastomapatients
AT liumin twomachinelearningmethodsidentifyametastasisrelatedprognosticmodelthatpredictsoverallsurvivalinmedulloblastomapatients
AT lianhao twomachinelearningmethodsidentifyametastasisrelatedprognosticmodelthatpredictsoverallsurvivalinmedulloblastomapatients
AT zhongchunlong twomachinelearningmethodsidentifyametastasisrelatedprognosticmodelthatpredictsoverallsurvivalinmedulloblastomapatients