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Automatic Stomatal Segmentation Based on Delaunay-Rayleigh Frequency Distance

The CO(2) and water vapor exchange between leaf and atmosphere are relevant for plant physiology. This process is done through the stomata. These structures are fundamental in the study of plants since their properties are linked to the evolutionary process of the plant, as well as its environmental...

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Autores principales: Carrasco, Miguel, Toledo, Patricio A., Velázquez, Ramiro, Bruno, Odemir M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7699937/
https://www.ncbi.nlm.nih.gov/pubmed/33233729
http://dx.doi.org/10.3390/plants9111613
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author Carrasco, Miguel
Toledo, Patricio A.
Velázquez, Ramiro
Bruno, Odemir M.
author_facet Carrasco, Miguel
Toledo, Patricio A.
Velázquez, Ramiro
Bruno, Odemir M.
author_sort Carrasco, Miguel
collection PubMed
description The CO(2) and water vapor exchange between leaf and atmosphere are relevant for plant physiology. This process is done through the stomata. These structures are fundamental in the study of plants since their properties are linked to the evolutionary process of the plant, as well as its environmental and phytohormonal conditions. Stomatal detection is a complex task due to the noise and morphology of the microscopic images. Although in recent years segmentation algorithms have been developed that automate this process, they all use techniques that explore chromatic characteristics. This research explores a unique feature in plants, which corresponds to the stomatal spatial distribution within the leaf structure. Unlike segmentation techniques based on deep learning tools, we emphasize the search for an optimal threshold level, so that a high percentage of stomata can be detected, independent of the size and shape of the stomata. This last feature has not been reported in the literature, except for those results of geometric structure formation in the salt formation and other biological formations.
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spelling pubmed-76999372020-11-29 Automatic Stomatal Segmentation Based on Delaunay-Rayleigh Frequency Distance Carrasco, Miguel Toledo, Patricio A. Velázquez, Ramiro Bruno, Odemir M. Plants (Basel) Article The CO(2) and water vapor exchange between leaf and atmosphere are relevant for plant physiology. This process is done through the stomata. These structures are fundamental in the study of plants since their properties are linked to the evolutionary process of the plant, as well as its environmental and phytohormonal conditions. Stomatal detection is a complex task due to the noise and morphology of the microscopic images. Although in recent years segmentation algorithms have been developed that automate this process, they all use techniques that explore chromatic characteristics. This research explores a unique feature in plants, which corresponds to the stomatal spatial distribution within the leaf structure. Unlike segmentation techniques based on deep learning tools, we emphasize the search for an optimal threshold level, so that a high percentage of stomata can be detected, independent of the size and shape of the stomata. This last feature has not been reported in the literature, except for those results of geometric structure formation in the salt formation and other biological formations. MDPI 2020-11-20 /pmc/articles/PMC7699937/ /pubmed/33233729 http://dx.doi.org/10.3390/plants9111613 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Carrasco, Miguel
Toledo, Patricio A.
Velázquez, Ramiro
Bruno, Odemir M.
Automatic Stomatal Segmentation Based on Delaunay-Rayleigh Frequency Distance
title Automatic Stomatal Segmentation Based on Delaunay-Rayleigh Frequency Distance
title_full Automatic Stomatal Segmentation Based on Delaunay-Rayleigh Frequency Distance
title_fullStr Automatic Stomatal Segmentation Based on Delaunay-Rayleigh Frequency Distance
title_full_unstemmed Automatic Stomatal Segmentation Based on Delaunay-Rayleigh Frequency Distance
title_short Automatic Stomatal Segmentation Based on Delaunay-Rayleigh Frequency Distance
title_sort automatic stomatal segmentation based on delaunay-rayleigh frequency distance
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7699937/
https://www.ncbi.nlm.nih.gov/pubmed/33233729
http://dx.doi.org/10.3390/plants9111613
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