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HACANCOi: a new H(α)-detected experiment for backbone resonance assignment of intrinsically disordered proteins

Unidirectional coherence transfer is highly efficient in intrinsically disordered proteins (IDPs). Their elevated ps-ns timescale dynamics ensures long transverse (T(2)) relaxation times allowing sophisticated coherence transfer pathway selection in comparison to folded proteins. (1)H(α)-detection e...

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Autores principales: Karjalainen, Mikael, Tossavainen, Helena, Hellman, Maarit, Permi, Perttu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7701164/
https://www.ncbi.nlm.nih.gov/pubmed/33118136
http://dx.doi.org/10.1007/s10858-020-00347-5
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author Karjalainen, Mikael
Tossavainen, Helena
Hellman, Maarit
Permi, Perttu
author_facet Karjalainen, Mikael
Tossavainen, Helena
Hellman, Maarit
Permi, Perttu
author_sort Karjalainen, Mikael
collection PubMed
description Unidirectional coherence transfer is highly efficient in intrinsically disordered proteins (IDPs). Their elevated ps-ns timescale dynamics ensures long transverse (T(2)) relaxation times allowing sophisticated coherence transfer pathway selection in comparison to folded proteins. (1)H(α)-detection ensures non-susceptibility to chemical exchange with the solvent and enables chemical shift assignment of consecutive proline residues, typically abundant in IDPs. However, many IDPs undergo a disorder-to-order transition upon interaction with their target protein, which leads to the loss of the favorable relaxation properties. Long coherence transfer routes now result in prohibitively large decrease in sensitivity. We introduce a novel 4D (1)H(α)-detected experiment HACANCOi, together with its 3D implementation, which warrant high sensitivity for the assignment of proline-rich regions in IDPs in complex with a globular protein. The experiment correlates (1)H(α)(i), (13)C(α)(i), (15)N(i) and [Formula: see text] spins by transferring the magnetization concomitantly from (13)C(α)(i) to (15)N(i) and [Formula: see text] . The B1 domain of protein G (GB1), and the enteropathogenic E. coli EspF in complex with human SNX9 SH3, serve as model systems to demonstrate the attainable sensitivity and successful sequential assignment. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10858-020-00347-5) contains supplementary material, which is available to authorized users.
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spelling pubmed-77011642020-12-03 HACANCOi: a new H(α)-detected experiment for backbone resonance assignment of intrinsically disordered proteins Karjalainen, Mikael Tossavainen, Helena Hellman, Maarit Permi, Perttu J Biomol NMR Article Unidirectional coherence transfer is highly efficient in intrinsically disordered proteins (IDPs). Their elevated ps-ns timescale dynamics ensures long transverse (T(2)) relaxation times allowing sophisticated coherence transfer pathway selection in comparison to folded proteins. (1)H(α)-detection ensures non-susceptibility to chemical exchange with the solvent and enables chemical shift assignment of consecutive proline residues, typically abundant in IDPs. However, many IDPs undergo a disorder-to-order transition upon interaction with their target protein, which leads to the loss of the favorable relaxation properties. Long coherence transfer routes now result in prohibitively large decrease in sensitivity. We introduce a novel 4D (1)H(α)-detected experiment HACANCOi, together with its 3D implementation, which warrant high sensitivity for the assignment of proline-rich regions in IDPs in complex with a globular protein. The experiment correlates (1)H(α)(i), (13)C(α)(i), (15)N(i) and [Formula: see text] spins by transferring the magnetization concomitantly from (13)C(α)(i) to (15)N(i) and [Formula: see text] . The B1 domain of protein G (GB1), and the enteropathogenic E. coli EspF in complex with human SNX9 SH3, serve as model systems to demonstrate the attainable sensitivity and successful sequential assignment. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10858-020-00347-5) contains supplementary material, which is available to authorized users. Springer Netherlands 2020-10-28 2020 /pmc/articles/PMC7701164/ /pubmed/33118136 http://dx.doi.org/10.1007/s10858-020-00347-5 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Karjalainen, Mikael
Tossavainen, Helena
Hellman, Maarit
Permi, Perttu
HACANCOi: a new H(α)-detected experiment for backbone resonance assignment of intrinsically disordered proteins
title HACANCOi: a new H(α)-detected experiment for backbone resonance assignment of intrinsically disordered proteins
title_full HACANCOi: a new H(α)-detected experiment for backbone resonance assignment of intrinsically disordered proteins
title_fullStr HACANCOi: a new H(α)-detected experiment for backbone resonance assignment of intrinsically disordered proteins
title_full_unstemmed HACANCOi: a new H(α)-detected experiment for backbone resonance assignment of intrinsically disordered proteins
title_short HACANCOi: a new H(α)-detected experiment for backbone resonance assignment of intrinsically disordered proteins
title_sort hacancoi: a new h(α)-detected experiment for backbone resonance assignment of intrinsically disordered proteins
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7701164/
https://www.ncbi.nlm.nih.gov/pubmed/33118136
http://dx.doi.org/10.1007/s10858-020-00347-5
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