Cargando…
Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs
We perform unsupervised analysis of image-derived shape and motion features extracted from 3,822 cardiac Magnetic resonance imaging (MRIs) of the UK Biobank. First, with a feature extraction method previously published based on deep learning models, we extract from each case 9 feature values charact...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7701336/ https://www.ncbi.nlm.nih.gov/pubmed/33313075 http://dx.doi.org/10.3389/fcvm.2020.539788 |
_version_ | 1783616473507299328 |
---|---|
author | Zheng, Qiao Delingette, Hervé Fung, Kenneth Petersen, Steffen E. Ayache, Nicholas |
author_facet | Zheng, Qiao Delingette, Hervé Fung, Kenneth Petersen, Steffen E. Ayache, Nicholas |
author_sort | Zheng, Qiao |
collection | PubMed |
description | We perform unsupervised analysis of image-derived shape and motion features extracted from 3,822 cardiac Magnetic resonance imaging (MRIs) of the UK Biobank. First, with a feature extraction method previously published based on deep learning models, we extract from each case 9 feature values characterizing both the cardiac shape and motion. Second, a feature selection is performed to remove highly correlated feature pairs. Third, clustering is carried out using a Gaussian mixture model on the selected features. After analysis, we identify 2 small clusters that probably correspond to 2 pathological categories. Further confirmation using a trained classification model and dimensionality reduction tools is carried out to support this finding. Moreover, we examine the differences between the other large clusters and compare our measures with the ground truth. |
format | Online Article Text |
id | pubmed-7701336 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77013362020-12-10 Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs Zheng, Qiao Delingette, Hervé Fung, Kenneth Petersen, Steffen E. Ayache, Nicholas Front Cardiovasc Med Cardiovascular Medicine We perform unsupervised analysis of image-derived shape and motion features extracted from 3,822 cardiac Magnetic resonance imaging (MRIs) of the UK Biobank. First, with a feature extraction method previously published based on deep learning models, we extract from each case 9 feature values characterizing both the cardiac shape and motion. Second, a feature selection is performed to remove highly correlated feature pairs. Third, clustering is carried out using a Gaussian mixture model on the selected features. After analysis, we identify 2 small clusters that probably correspond to 2 pathological categories. Further confirmation using a trained classification model and dimensionality reduction tools is carried out to support this finding. Moreover, we examine the differences between the other large clusters and compare our measures with the ground truth. Frontiers Media S.A. 2020-11-16 /pmc/articles/PMC7701336/ /pubmed/33313075 http://dx.doi.org/10.3389/fcvm.2020.539788 Text en Copyright © 2020 Zheng, Delingette, Fung, Petersen and Ayache. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cardiovascular Medicine Zheng, Qiao Delingette, Hervé Fung, Kenneth Petersen, Steffen E. Ayache, Nicholas Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs |
title | Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs |
title_full | Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs |
title_fullStr | Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs |
title_full_unstemmed | Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs |
title_short | Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs |
title_sort | pathological cluster identification by unsupervised analysis in 3,822 uk biobank cardiac mris |
topic | Cardiovascular Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7701336/ https://www.ncbi.nlm.nih.gov/pubmed/33313075 http://dx.doi.org/10.3389/fcvm.2020.539788 |
work_keys_str_mv | AT zhengqiao pathologicalclusteridentificationbyunsupervisedanalysisin3822ukbiobankcardiacmris AT delingetteherve pathologicalclusteridentificationbyunsupervisedanalysisin3822ukbiobankcardiacmris AT fungkenneth pathologicalclusteridentificationbyunsupervisedanalysisin3822ukbiobankcardiacmris AT petersensteffene pathologicalclusteridentificationbyunsupervisedanalysisin3822ukbiobankcardiacmris AT ayachenicholas pathologicalclusteridentificationbyunsupervisedanalysisin3822ukbiobankcardiacmris |