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Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs

We perform unsupervised analysis of image-derived shape and motion features extracted from 3,822 cardiac Magnetic resonance imaging (MRIs) of the UK Biobank. First, with a feature extraction method previously published based on deep learning models, we extract from each case 9 feature values charact...

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Detalles Bibliográficos
Autores principales: Zheng, Qiao, Delingette, Hervé, Fung, Kenneth, Petersen, Steffen E., Ayache, Nicholas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7701336/
https://www.ncbi.nlm.nih.gov/pubmed/33313075
http://dx.doi.org/10.3389/fcvm.2020.539788
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author Zheng, Qiao
Delingette, Hervé
Fung, Kenneth
Petersen, Steffen E.
Ayache, Nicholas
author_facet Zheng, Qiao
Delingette, Hervé
Fung, Kenneth
Petersen, Steffen E.
Ayache, Nicholas
author_sort Zheng, Qiao
collection PubMed
description We perform unsupervised analysis of image-derived shape and motion features extracted from 3,822 cardiac Magnetic resonance imaging (MRIs) of the UK Biobank. First, with a feature extraction method previously published based on deep learning models, we extract from each case 9 feature values characterizing both the cardiac shape and motion. Second, a feature selection is performed to remove highly correlated feature pairs. Third, clustering is carried out using a Gaussian mixture model on the selected features. After analysis, we identify 2 small clusters that probably correspond to 2 pathological categories. Further confirmation using a trained classification model and dimensionality reduction tools is carried out to support this finding. Moreover, we examine the differences between the other large clusters and compare our measures with the ground truth.
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spelling pubmed-77013362020-12-10 Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs Zheng, Qiao Delingette, Hervé Fung, Kenneth Petersen, Steffen E. Ayache, Nicholas Front Cardiovasc Med Cardiovascular Medicine We perform unsupervised analysis of image-derived shape and motion features extracted from 3,822 cardiac Magnetic resonance imaging (MRIs) of the UK Biobank. First, with a feature extraction method previously published based on deep learning models, we extract from each case 9 feature values characterizing both the cardiac shape and motion. Second, a feature selection is performed to remove highly correlated feature pairs. Third, clustering is carried out using a Gaussian mixture model on the selected features. After analysis, we identify 2 small clusters that probably correspond to 2 pathological categories. Further confirmation using a trained classification model and dimensionality reduction tools is carried out to support this finding. Moreover, we examine the differences between the other large clusters and compare our measures with the ground truth. Frontiers Media S.A. 2020-11-16 /pmc/articles/PMC7701336/ /pubmed/33313075 http://dx.doi.org/10.3389/fcvm.2020.539788 Text en Copyright © 2020 Zheng, Delingette, Fung, Petersen and Ayache. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cardiovascular Medicine
Zheng, Qiao
Delingette, Hervé
Fung, Kenneth
Petersen, Steffen E.
Ayache, Nicholas
Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs
title Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs
title_full Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs
title_fullStr Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs
title_full_unstemmed Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs
title_short Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs
title_sort pathological cluster identification by unsupervised analysis in 3,822 uk biobank cardiac mris
topic Cardiovascular Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7701336/
https://www.ncbi.nlm.nih.gov/pubmed/33313075
http://dx.doi.org/10.3389/fcvm.2020.539788
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